Wall clock time and date at job start Mon Mar 30 2020 02:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99817 * 2 1 4 4 H 1.48498 * 109.47273 * 240.00258 * 3 2 1 5 5 H 1.48498 * 109.47158 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 120.00362 * 3 2 1 7 7 C 1.37874 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00405 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99794 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.24988 * 300.53661 * 9 7 2 11 11 C 1.52820 * 109.25171 * 60.00906 * 9 7 2 12 12 C 1.53616 * 110.69696 * 174.06785 * 11 9 7 13 13 N 1.45678 * 107.87084 * 302.56552 * 12 11 9 14 14 C 1.47000 * 116.53408 * 182.53200 * 13 12 11 15 15 C 1.55258 * 103.53084 * 197.78242 * 14 13 12 16 16 H 1.08997 * 118.29209 * 164.56873 * 15 14 13 17 17 C 1.56533 * 117.30988 * 321.59791 * 15 14 13 18 18 C 1.52896 * 60.10738 * 91.56163 * 17 15 14 19 19 H 1.08996 * 119.38674 * 112.16274 * 18 17 15 20 20 C 1.48822 * 109.27610 * 65.47757 * 13 12 11 21 21 H 1.09002 * 110.84968 * 50.89330 * 20 13 12 22 22 C 1.52239 * 107.57326 * 290.30571 * 20 13 12 23 23 H 0.96998 * 119.99987 * 359.97438 * 1 2 3 24 24 H 1.08991 * 109.23295 * 53.74490 * 11 9 7 25 25 H 1.09005 * 109.19599 * 294.35423 * 11 9 7 26 26 H 1.09002 * 109.79243 * 62.17713 * 12 11 9 27 27 H 1.09000 * 109.78679 * 182.96027 * 12 11 9 28 28 H 1.09006 * 110.58832 * 79.28075 * 14 13 12 29 29 H 1.09000 * 110.62231 * 316.30262 * 14 13 12 30 30 H 1.09001 * 118.32985 * 344.49960 * 17 15 14 31 31 H 1.09006 * 116.88985 * 199.25149 * 17 15 14 32 32 H 1.09000 * 109.83785 * 303.38395 * 22 20 13 33 33 H 1.08999 * 109.84261 * 182.42207 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6189 -2.5492 0.8860 11 6 0.3741 -2.5747 -1.2498 12 6 -0.2966 -3.9523 -1.3598 13 7 0.7542 -4.9611 -1.3758 14 6 0.3220 -6.3571 -1.5352 15 6 1.5517 -7.1750 -1.0564 16 1 1.4129 -8.2323 -0.8307 17 6 2.9689 -6.6312 -1.4386 18 6 2.3264 -6.2191 -0.1138 19 1 2.7614 -6.5677 0.8228 20 6 1.4582 -4.9580 -0.0646 21 1 0.7462 -5.0218 0.7582 22 6 2.2539 -3.6632 0.0267 23 1 -0.4850 0.8400 0.0004 24 1 0.9907 -2.4039 -2.1321 25 1 -0.3951 -1.8043 -1.1948 26 1 -0.9505 -4.1140 -0.5028 27 1 -0.8758 -4.0081 -2.2815 28 1 0.1009 -6.5729 -2.5805 29 1 -0.5448 -6.5646 -0.9077 30 1 3.0391 -5.8738 -2.2194 31 1 3.7966 -7.3392 -1.3961 32 1 2.9334 -3.5860 -0.8220 33 1 2.8200 -3.6418 0.9579 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259581260.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:37 Heat of formation + Delta-G solvation = 32.448742 kcal Electronic energy + Delta-G solvation = -14024.836589 eV Core-core repulsion = 11857.979615 eV Total energy + Delta-G solvation = -2166.856975 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.89986 -35.65280 -33.03755 -31.28395 -29.16281 -27.32822 -24.45279 -23.22588 -21.60638 -19.96355 -19.63641 -18.37385 -16.31459 -15.71207 -14.61354 -14.28118 -14.20726 -13.33363 -13.10069 -12.57133 -12.38621 -12.19878 -11.86705 -11.12788 -11.07387 -10.88012 -10.65928 -10.43399 -10.31917 -9.92787 -9.72994 -9.47621 -9.30677 -8.83431 -8.69269 -8.25622 -7.79702 -5.93728 -3.98723 3.35431 3.39682 3.42758 3.88469 4.47870 4.53884 4.85352 4.99932 5.29135 5.36201 5.43692 5.76354 5.83544 5.95516 6.01341 6.03158 6.16045 6.22712 6.28062 6.41526 6.57290 6.57613 6.69392 6.92925 7.09034 7.21286 7.46926 7.61451 7.73795 7.92051 8.09838 8.19653 8.52433 9.04875 9.65316 11.12512 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.058930 B = 0.008832 C = 0.008096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.028486 B = 3169.480480 C = 3457.865325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.047 3.953 10 H 0.019 0.981 11 C -0.101 4.101 12 C 0.054 3.946 13 N -0.521 5.521 14 C 0.068 3.932 15 C -0.186 4.186 16 H 0.110 0.890 17 C -0.132 4.132 18 C -0.155 4.155 19 H 0.105 0.895 20 C 0.091 3.909 21 H 0.049 0.951 22 C -0.090 4.090 23 H 0.259 0.741 24 H 0.044 0.956 25 H 0.091 0.909 26 H 0.022 0.978 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.038 0.962 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.406 -11.053 -1.710 11.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.029 3.971 10 H 0.037 0.963 11 C -0.139 4.139 12 C -0.073 4.073 13 N -0.246 5.246 14 C -0.061 4.061 15 C -0.205 4.205 16 H 0.128 0.872 17 C -0.169 4.169 18 C -0.173 4.173 19 H 0.123 0.877 20 C -0.017 4.017 21 H 0.067 0.933 22 C -0.128 4.128 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.109 0.891 26 H 0.040 0.960 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.121 0.879 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.520 -10.754 -2.146 11.071 hybrid contribution -0.243 0.627 0.717 0.983 sum 1.277 -10.127 -1.429 10.307 Atomic orbital electron populations 1.69867 1.05863 1.26372 1.51182 1.24974 0.94848 0.99002 0.95258 0.86689 0.79612 0.83307 0.78560 1.20318 1.21396 1.20387 1.21186 0.92876 0.90633 1.50034 0.92761 1.18728 0.92619 0.91863 0.93903 0.96318 1.21682 1.00500 0.92224 0.99485 1.22247 0.92300 0.94113 0.98671 1.63985 1.26974 1.02692 1.30924 1.22298 0.94399 0.89086 1.00277 1.24124 0.92004 0.97319 1.07018 0.87209 1.23245 0.93062 1.01962 0.98594 1.23148 1.02561 0.96786 0.94837 0.87657 1.22049 0.94784 0.94545 0.90350 0.93319 1.21515 0.98402 0.92724 1.00193 0.93078 0.93754 0.89052 0.95967 0.92509 0.90797 0.94388 0.87907 0.89165 0.92235 0.93325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.71 11.36 55.43 0.63 -25.08 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.17 8.54 -34.44 -0.29 -14.47 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.05 1.20 2.15 -91.51 -0.20 1.00 16 10 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 11 C -0.10 -2.43 5.03 -26.50 -0.13 -2.56 16 12 C 0.05 1.10 5.86 -4.16 -0.02 1.08 16 13 N -0.52 -9.76 4.36 -224.49 -0.98 -10.74 16 14 C 0.07 1.05 6.62 -2.57 -0.02 1.03 16 15 C -0.19 -2.61 7.41 -86.47 -0.64 -3.26 16 16 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 17 C -0.13 -1.87 10.01 -24.88 -0.25 -2.12 16 18 C -0.15 -2.41 6.59 -89.52 -0.59 -3.00 16 19 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 20 C 0.09 1.71 2.42 -66.94 -0.16 1.55 16 21 H 0.05 0.96 8.00 -51.93 -0.42 0.54 16 22 C -0.09 -1.96 4.94 -26.77 -0.13 -2.09 16 23 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.04 1.11 8.13 -51.93 -0.42 0.68 16 25 H 0.09 2.43 6.20 -51.93 -0.32 2.11 16 26 H 0.02 0.45 8.00 -51.93 -0.42 0.04 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.10 1.64 7.98 -51.93 -0.41 1.23 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 259.08 15.07 3.90 3.90 Total: -1.00 -28.23 259.08 -9.33 -37.57 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -5.33 Total: -0.91 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -2.53 Total: -21.26 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.35 Total: -35.82 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.23 -9.33 -37.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259581260.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.014 kcal (2) G-P(sol) polarization free energy of solvation -28.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds