Wall clock time and date at job start Mon Mar 30 2020 02:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99817 * 2 1 4 4 H 1.48498 * 109.47273 * 240.00258 * 3 2 1 5 5 H 1.48498 * 109.47158 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 120.00362 * 3 2 1 7 7 C 1.37874 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00405 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99794 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.24988 * 300.53661 * 9 7 2 11 11 C 1.52820 * 109.25171 * 60.00906 * 9 7 2 12 12 C 1.53616 * 110.69696 * 174.06785 * 11 9 7 13 13 N 1.45678 * 107.87084 * 302.56552 * 12 11 9 14 14 C 1.47000 * 116.53408 * 182.53200 * 13 12 11 15 15 C 1.55258 * 103.53084 * 197.78242 * 14 13 12 16 16 H 1.08997 * 118.29209 * 164.56873 * 15 14 13 17 17 C 1.56533 * 117.30988 * 321.59791 * 15 14 13 18 18 C 1.52896 * 60.10738 * 91.56163 * 17 15 14 19 19 H 1.08996 * 119.38674 * 112.16274 * 18 17 15 20 20 C 1.48822 * 109.27610 * 65.47757 * 13 12 11 21 21 H 1.09002 * 110.84968 * 50.89330 * 20 13 12 22 22 C 1.52239 * 107.57326 * 290.30571 * 20 13 12 23 23 H 0.96998 * 119.99987 * 359.97438 * 1 2 3 24 24 H 1.08991 * 109.23295 * 53.74490 * 11 9 7 25 25 H 1.09005 * 109.19599 * 294.35423 * 11 9 7 26 26 H 1.09002 * 109.79243 * 62.17713 * 12 11 9 27 27 H 1.09000 * 109.78679 * 182.96027 * 12 11 9 28 28 H 1.09006 * 110.58832 * 79.28075 * 14 13 12 29 29 H 1.09000 * 110.62231 * 316.30262 * 14 13 12 30 30 H 1.09001 * 118.32985 * 344.49960 * 17 15 14 31 31 H 1.09006 * 116.88985 * 199.25149 * 17 15 14 32 32 H 1.09000 * 109.83785 * 303.38395 * 22 20 13 33 33 H 1.08999 * 109.84261 * 182.42207 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6189 -2.5492 0.8860 11 6 0.3741 -2.5747 -1.2498 12 6 -0.2966 -3.9523 -1.3598 13 7 0.7542 -4.9611 -1.3758 14 6 0.3220 -6.3571 -1.5352 15 6 1.5517 -7.1750 -1.0564 16 1 1.4129 -8.2323 -0.8307 17 6 2.9689 -6.6312 -1.4386 18 6 2.3264 -6.2191 -0.1138 19 1 2.7614 -6.5677 0.8228 20 6 1.4582 -4.9580 -0.0646 21 1 0.7462 -5.0218 0.7582 22 6 2.2539 -3.6632 0.0267 23 1 -0.4850 0.8400 0.0004 24 1 0.9907 -2.4039 -2.1321 25 1 -0.3951 -1.8043 -1.1948 26 1 -0.9505 -4.1140 -0.5028 27 1 -0.8758 -4.0081 -2.2815 28 1 0.1009 -6.5729 -2.5805 29 1 -0.5448 -6.5646 -0.9077 30 1 3.0391 -5.8738 -2.2194 31 1 3.7966 -7.3392 -1.3961 32 1 2.9334 -3.5860 -0.8220 33 1 2.8200 -3.6418 0.9579 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259581260.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:37 Heat of formation + Delta-G solvation = 16.151291 kcal Electronic energy + Delta-G solvation = -14025.543300 eV Core-core repulsion = 11857.979615 eV Total energy + Delta-G solvation = -2167.563685 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.30902 -37.32803 -34.82266 -33.11271 -30.82625 -28.97745 -26.29513 -24.69451 -23.31569 -21.41824 -21.03421 -20.00261 -18.31266 -17.15933 -16.58315 -15.87608 -15.67402 -14.90093 -14.72404 -14.25773 -13.98505 -13.76448 -13.55801 -12.82914 -12.80731 -12.44068 -12.35124 -12.20168 -12.07271 -11.80695 -11.30516 -11.01627 -10.89653 -10.69076 -10.42755 -10.31838 -9.30247 -8.08448 -6.22055 1.40844 1.42523 1.50135 2.43335 2.74196 3.10474 3.18204 3.61335 3.81535 4.06086 4.16831 4.35315 4.37300 4.51816 4.61378 4.73595 4.78292 4.80446 4.89931 4.96305 4.99113 5.06103 5.13470 5.29674 5.31191 5.45639 5.56291 5.62932 5.93301 6.01962 6.20537 6.37484 6.41108 6.89094 7.45499 8.96026 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.058930 B = 0.008832 C = 0.008096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.028486 B = 3169.480480 C = 3457.865325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.534 4.534 8 H 0.051 0.949 9 C 0.044 3.956 10 H -0.015 1.015 11 C -0.091 4.091 12 C 0.066 3.934 13 N -0.531 5.531 14 C 0.062 3.938 15 C -0.166 4.166 16 H 0.144 0.856 17 C -0.126 4.126 18 C -0.170 4.170 19 H 0.124 0.876 20 C 0.091 3.909 21 H 0.037 0.963 22 C -0.080 4.080 23 H 0.260 0.740 24 H 0.027 0.973 25 H 0.061 0.939 26 H 0.017 0.983 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.121 0.879 32 H 0.050 0.950 33 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.203 -12.738 -2.111 13.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.572 4.572 8 H 0.069 0.931 9 C 0.026 3.974 10 H 0.003 0.997 11 C -0.129 4.129 12 C -0.063 4.063 13 N -0.256 5.256 14 C -0.065 4.065 15 C -0.184 4.184 16 H 0.161 0.839 17 C -0.163 4.163 18 C -0.189 4.189 19 H 0.142 0.858 20 C -0.017 4.017 21 H 0.055 0.945 22 C -0.118 4.118 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.035 0.965 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.139 0.861 32 H 0.069 0.931 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.321 -12.455 -2.549 12.923 hybrid contribution -0.511 1.163 0.836 1.521 sum 1.810 -11.292 -1.714 11.563 Atomic orbital electron populations 1.70010 1.07161 1.27152 1.51518 1.25766 0.95727 1.02423 0.94817 0.85669 0.78440 0.79087 0.78813 1.19710 1.20828 1.19653 1.21557 0.92986 0.92209 1.50437 0.93116 1.18711 0.93040 0.92796 0.92897 0.99663 1.21428 0.99276 0.94150 0.98049 1.21997 0.92364 0.92561 0.99338 1.63916 1.26545 1.04370 1.30765 1.22458 0.95619 0.86956 1.01515 1.24261 0.90886 0.98296 1.04959 0.83885 1.23329 0.94380 1.01915 0.96685 1.23103 1.03813 0.95388 0.96576 0.85843 1.21936 0.94967 0.94694 0.90125 0.94529 1.21321 0.97553 0.93181 0.99726 0.93049 0.95368 0.92027 0.96479 0.90716 0.89347 0.93652 0.90038 0.86060 0.93127 0.93295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.36 11.36 21.45 0.24 -54.12 16 2 C 0.01 0.62 5.30 84.65 0.45 1.07 16 3 Si 0.95 44.69 29.54 68.60 2.03 46.71 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.53 -30.60 8.54 25.60 0.22 -30.38 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.04 2.32 2.15 -11.37 -0.02 2.30 16 10 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 11 C -0.09 -4.53 5.03 30.74 0.15 -4.38 16 12 C 0.07 2.66 5.86 86.74 0.51 3.17 16 13 N -0.53 -19.35 4.36 -864.14 -3.76 -23.11 16 14 C 0.06 1.75 6.62 87.06 0.58 2.33 16 15 C -0.17 -3.99 7.41 -8.10 -0.06 -4.05 16 16 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 17 C -0.13 -3.17 10.01 31.79 0.32 -2.85 16 18 C -0.17 -4.85 6.59 -10.08 -0.07 -4.92 16 19 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 20 C 0.09 3.36 2.42 44.35 0.11 3.47 16 21 H 0.04 1.44 8.00 -2.39 -0.02 1.42 16 22 C -0.08 -3.52 4.94 30.57 0.15 -3.37 16 23 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 24 H 0.03 1.45 8.13 -2.39 -0.02 1.43 16 25 H 0.06 3.43 6.20 -2.38 -0.01 3.41 16 26 H 0.02 0.71 8.00 -2.39 -0.02 0.69 16 27 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 2.43 7.98 -2.39 -0.02 2.41 16 31 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 32 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -61.92 259.08 1.90 -60.02 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 1.06 Total: 8.10 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 2.33 Total: -37.61 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -3.52 Total: -77.23 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -61.92 1.90 -60.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259581260.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.172 kcal (2) G-P(sol) polarization free energy of solvation -61.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds