Wall clock time and date at job start Mon Mar 30 2020 02:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86791 * 120.00118 * 2 1 4 4 H 1.48507 * 109.47227 * 240.00064 * 3 2 1 5 5 H 1.48506 * 109.47390 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47439 * 120.00171 * 3 2 1 7 7 C 1.37881 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99431 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00078 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.23997 * 299.43234 * 9 7 2 11 11 C 1.52805 * 109.24608 * 58.83749 * 9 7 2 12 12 C 1.53659 * 110.73910 * 66.63833 * 11 9 7 13 13 N 1.45609 * 107.74890 * 57.29169 * 12 11 9 14 14 C 1.47064 * 116.77624 * 177.11930 * 13 12 11 15 15 C 1.55261 * 103.39788 * 163.41807 * 14 13 12 16 16 H 1.09002 * 117.62800 * 113.03558 * 15 14 13 17 17 C 1.52708 * 118.53066 * 271.17792 * 15 14 13 18 18 C 1.53285 * 60.86901 * 90.98124 * 17 15 14 19 19 H 1.08999 * 120.32918 * 112.04710 * 18 17 15 20 20 C 1.48684 * 109.42249 * 294.44051 * 13 12 11 21 21 H 1.09000 * 110.27229 * 309.64116 * 20 13 12 22 22 C 1.52229 * 107.49046 * 69.85211 * 20 13 12 23 23 H 0.96999 * 120.00297 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.22784 * 186.96233 * 11 9 7 25 25 H 1.09007 * 109.22506 * 306.31961 * 11 9 7 26 26 H 1.09000 * 109.80435 * 176.85177 * 12 11 9 27 27 H 1.09003 * 109.80074 * 297.72707 * 12 11 9 28 28 H 1.08994 * 110.62768 * 281.78581 * 14 13 12 29 29 H 1.09006 * 110.62455 * 44.80399 * 14 13 12 30 30 H 1.08999 * 117.41389 * 343.23989 * 17 15 14 31 31 H 1.09005 * 117.41139 * 198.71310 * 17 15 14 32 32 H 1.09002 * 109.84929 * 177.61429 * 22 20 13 33 33 H 1.08994 * 109.84838 * 56.69192 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 1 0.6330 -2.5579 0.8943 11 6 0.3530 -2.5612 -1.2366 12 6 1.1961 -2.6327 -2.5193 13 7 2.0615 -3.7993 -2.4172 14 6 2.9146 -4.0949 -3.5780 15 6 3.9754 -5.0733 -3.0050 16 1 3.9624 -6.1014 -3.3668 17 6 5.2498 -4.4925 -2.3964 18 6 4.0380 -4.7431 -1.4919 19 1 4.0737 -5.5177 -0.7259 20 6 3.0323 -3.5993 -1.3089 21 1 3.5244 -2.6317 -1.4079 22 6 2.2543 -3.6633 -0.0020 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2819 -3.4451 -1.1747 25 1 -0.2748 -1.6707 -1.2690 26 1 0.5424 -2.7326 -3.3857 27 1 1.8012 -1.7311 -2.6142 28 1 2.3366 -4.5765 -4.3666 29 1 3.3880 -3.1855 -3.9482 30 1 5.4929 -3.4570 -2.6344 31 1 6.1039 -5.1611 -2.2877 32 1 2.9379 -3.5629 0.8410 33 1 1.7210 -4.6115 0.0651 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259581265.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:38 Heat of formation + Delta-G solvation = 16.210872 kcal Electronic energy + Delta-G solvation = -14252.579406 eV Core-core repulsion = 12085.018305 eV Total energy + Delta-G solvation = -2167.561101 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.31670 -37.58310 -34.73032 -33.11634 -30.93140 -28.66344 -26.60059 -24.32214 -23.30580 -21.58112 -21.02426 -20.52371 -17.88839 -16.80658 -16.68038 -15.83389 -15.66225 -15.33124 -14.68669 -14.41744 -13.86595 -13.71906 -13.12266 -13.00406 -12.79763 -12.51182 -12.40692 -12.11945 -12.05782 -11.73025 -11.25005 -10.97685 -10.90620 -10.73201 -10.65778 -10.32776 -9.17523 -8.06768 -6.19451 1.38364 1.38880 1.46378 2.41698 2.75188 3.18141 3.19211 3.62477 3.81006 4.18385 4.23754 4.34010 4.42910 4.50574 4.55159 4.68102 4.78030 4.85520 4.90011 4.95937 5.03529 5.16710 5.26944 5.28698 5.37724 5.44878 5.59241 5.61016 5.79397 6.02272 6.26334 6.40631 6.46544 6.90078 7.46735 8.96714 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.040189 B = 0.011018 C = 0.010245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.538607 B = 2540.696016 C = 2732.473693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.945 3.055 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.515 4.515 8 H 0.047 0.953 9 C 0.037 3.963 10 H -0.009 1.009 11 C -0.098 4.098 12 C 0.080 3.920 13 N -0.531 5.531 14 C 0.064 3.936 15 C -0.156 4.156 16 H 0.137 0.863 17 C -0.135 4.135 18 C -0.173 4.173 19 H 0.125 0.875 20 C 0.105 3.895 21 H 0.029 0.971 22 C -0.084 4.084 23 H 0.260 0.740 24 H 0.026 0.974 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.012 0.988 28 H 0.093 0.907 29 H 0.028 0.972 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.051 0.949 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.636 -8.047 -5.980 12.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.771 3.229 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.066 0.934 9 C 0.019 3.981 10 H 0.009 0.991 11 C -0.136 4.136 12 C -0.048 4.048 13 N -0.256 5.256 14 C -0.063 4.063 15 C -0.175 4.175 16 H 0.155 0.845 17 C -0.172 4.172 18 C -0.192 4.192 19 H 0.143 0.857 20 C -0.003 4.003 21 H 0.047 0.953 22 C -0.122 4.122 23 H 0.069 0.931 24 H 0.045 0.955 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.030 0.970 28 H 0.112 0.888 29 H 0.046 0.954 30 H 0.097 0.903 31 H 0.148 0.852 32 H 0.069 0.931 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.079 -8.312 -5.919 12.419 hybrid contribution 0.412 1.954 0.083 1.998 sum 7.491 -6.358 -5.836 11.428 Atomic orbital electron populations 1.69967 1.07010 1.26955 1.51680 1.25652 0.95578 1.01960 0.95250 0.85813 0.78557 0.79858 0.78656 1.20065 1.20926 1.19733 1.21397 0.92502 0.91769 1.49673 0.93447 1.18761 0.93241 0.92897 0.93249 0.99110 1.21447 0.97941 0.99573 0.94683 1.21706 0.95056 0.89857 0.98138 1.64013 1.19185 1.37741 1.04691 1.22451 0.93438 0.97028 0.93407 1.23694 0.97734 1.00750 0.95306 0.84484 1.23142 0.91801 1.02023 1.00250 1.23322 0.99898 1.01004 0.94964 0.85726 1.21729 0.90958 0.95314 0.92289 0.95279 1.21342 0.97535 0.97854 0.95441 0.93098 0.95539 0.91189 0.91669 0.97006 0.88824 0.95369 0.90272 0.85208 0.93079 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.34 11.18 21.45 0.24 -53.10 16 2 C 0.01 0.77 5.28 84.66 0.45 1.21 16 3 Si 0.94 44.13 29.54 68.60 2.03 46.16 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.52 -28.53 6.96 25.60 0.18 -28.35 16 8 H 0.05 2.61 6.95 -2.91 -0.02 2.59 16 9 C 0.04 1.92 2.56 -11.38 -0.03 1.90 16 10 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 11 C -0.10 -4.88 5.35 30.75 0.16 -4.71 16 12 C 0.08 3.54 5.68 86.77 0.49 4.03 16 13 N -0.53 -20.65 4.81 -864.04 -4.16 -24.81 16 14 C 0.06 2.00 6.54 87.05 0.57 2.57 16 15 C -0.16 -4.07 7.14 -9.43 -0.07 -4.14 16 16 H 0.14 2.88 8.14 -2.39 -0.02 2.86 16 17 C -0.14 -3.29 10.05 30.59 0.31 -2.98 16 18 C -0.17 -5.24 6.72 -9.88 -0.07 -5.31 16 19 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 20 C 0.10 4.14 2.16 44.45 0.10 4.24 16 21 H 0.03 1.33 6.51 -2.39 -0.02 1.31 16 22 C -0.08 -3.65 5.18 30.57 0.16 -3.49 16 23 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 24 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 3.89 5.78 -2.38 -0.01 3.88 16 26 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.01 0.57 7.45 -2.39 -0.02 0.55 16 28 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.13 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -60.36 255.02 1.43 -58.93 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.07 Total: 7.86 kcal Atomic # 6 Polarization: -37.29 SS G_CDS: 2.25 Total: -35.04 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -3.92 Total: -77.91 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -60.36 1.43 -58.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259581265.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.146 kcal (2) G-P(sol) polarization free energy of solvation -60.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds