Wall clock time and date at job start Mon Mar 30 2020 02:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48134 * 110.99790 * 2 1 4 4 C 1.51204 * 105.63956 * 214.04396 * 3 2 1 5 5 N 1.34045 * 143.56385 * 197.20901 * 4 3 2 6 6 C 1.30506 * 109.37239 * 180.02562 * 5 4 3 7 7 N 1.35074 * 108.69420 * 0.02562 * 6 5 4 8 8 C 1.46503 * 126.41002 * 179.97438 * 7 6 5 9 9 C 1.50707 * 109.47063 * 265.02539 * 8 7 6 10 10 H 1.08000 * 119.99631 * 359.97438 * 9 8 7 11 11 C 1.37871 * 119.99865 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99771 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00537 * 359.97438 * 11 9 8 14 14 H 1.48492 * 109.47411 * 89.99747 * 13 11 9 15 15 H 1.48496 * 109.47420 * 210.00379 * 13 11 9 16 16 H 1.48507 * 109.46953 * 330.00006 * 13 11 9 17 17 C 1.34951 * 108.61177 * 17.28593 * 4 3 2 18 18 C 1.48152 * 111.00118 * 245.70439 * 2 1 3 19 19 H 1.08999 * 109.47008 * 60.12644 * 1 2 3 20 20 H 1.08999 * 109.46809 * 180.12608 * 1 2 3 21 21 H 1.08999 * 109.46846 * 300.12227 * 1 2 3 22 22 H 1.09002 * 110.22943 * 333.11233 * 3 2 1 23 23 H 1.09000 * 110.22696 * 94.98207 * 3 2 1 24 24 H 1.07997 * 125.65391 * 179.97438 * 6 5 4 25 25 H 1.08999 * 109.47679 * 25.02395 * 8 7 6 26 26 H 1.09003 * 109.47116 * 145.02889 * 8 7 6 27 27 H 0.97000 * 119.99830 * 179.97438 * 12 11 9 28 28 H 1.08999 * 110.23952 * 264.90234 * 18 2 1 29 29 H 1.09003 * 110.23939 * 26.79317 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9998 1.3830 0.0000 4 6 3.2723 1.3312 -0.8151 5 7 4.4067 1.9916 -1.0866 6 6 5.1059 1.3125 -1.9545 7 7 4.4307 0.1852 -2.2674 8 6 4.8620 -0.8549 -3.2045 9 6 4.2569 -0.5925 -4.5596 10 1 3.6150 0.2633 -4.7077 11 6 4.5221 -1.4455 -5.6098 12 7 3.9936 -1.2167 -6.7922 13 14 5.6319 -2.9260 -5.3535 14 1 4.8127 -4.0926 -4.9378 15 1 6.3360 -3.2424 -6.6221 16 1 6.6294 -2.6198 -4.2968 17 6 3.2694 0.1971 -1.5465 18 6 2.0000 -0.5691 -1.2606 19 1 -0.3633 0.5119 -0.8911 20 1 -0.3633 -1.0277 0.0023 21 1 -0.3633 0.5157 0.8889 22 1 1.2832 2.0617 -0.4625 23 1 2.2178 1.7030 1.0189 24 1 6.0649 1.6040 -2.3566 25 1 5.9491 -0.8445 -3.2839 26 1 4.5335 -1.8292 -2.8424 27 1 4.1805 -1.8166 -7.5312 28 1 2.2199 -1.6289 -1.1327 29 1 1.2828 -0.4283 -2.0694 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259583214.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:58 Heat of formation + Delta-G solvation = 90.338507 kcal Electronic energy + Delta-G solvation = -13324.827963 eV Core-core repulsion = 11056.940934 eV Total energy + Delta-G solvation = -2267.887029 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.71234 -37.66209 -34.06419 -32.21008 -30.37703 -28.41853 -27.19165 -25.43594 -22.86951 -21.74449 -19.64764 -19.27587 -17.27201 -16.02188 -15.57511 -14.82175 -14.63321 -14.47491 -13.70803 -13.08762 -12.74370 -12.67355 -12.49574 -12.14328 -11.98864 -11.59410 -11.30293 -11.09720 -10.88222 -10.42686 -9.85139 -9.20755 -8.90038 -8.69198 -8.63810 -7.44205 -6.38362 -4.43909 2.72687 3.06952 3.13752 3.15460 3.45933 3.64775 4.11121 4.13240 4.59889 4.90712 4.95422 5.34897 5.41663 5.57240 5.74219 5.80634 5.85858 5.88253 6.01010 6.12223 6.32539 6.46518 6.74594 6.98464 7.14853 7.21025 7.31817 7.89071 8.20070 8.64394 8.70550 9.16464 10.73797 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.039307 B = 0.009402 C = 0.008434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.167892 B = 2977.436621 C = 3319.208143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.504 5.504 3 C 0.130 3.870 4 C -0.048 4.048 5 N -0.487 5.487 6 C 0.185 3.815 7 N -0.397 5.397 8 C 0.201 3.799 9 C -0.549 4.549 10 H 0.081 0.919 11 C 0.081 3.919 12 N -0.883 5.883 13 Si 0.876 3.124 14 H -0.271 1.271 15 H -0.279 1.279 16 H -0.264 1.264 17 C -0.051 4.051 18 C 0.127 3.873 19 H 0.034 0.966 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.056 0.944 23 H 0.086 0.914 24 H 0.205 0.795 25 H 0.051 0.949 26 H 0.041 0.959 27 H 0.270 0.730 28 H 0.085 0.915 29 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.076 -0.192 9.818 10.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.228 5.228 3 C 0.001 3.999 4 C -0.180 4.180 5 N -0.206 5.206 6 C -0.097 4.097 7 N -0.074 5.074 8 C 0.081 3.919 9 C -0.587 4.587 10 H 0.099 0.901 11 C -0.124 4.124 12 N -0.520 5.520 13 Si 0.702 3.298 14 H -0.196 1.196 15 H -0.204 1.204 16 H -0.188 1.188 17 C -0.171 4.171 18 C -0.002 4.002 19 H 0.053 0.947 20 H 0.092 0.908 21 H 0.091 0.909 22 H 0.074 0.926 23 H 0.104 0.896 24 H 0.221 0.779 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.627 0.043 10.302 10.632 hybrid contribution 0.181 -1.131 -1.399 1.808 sum -2.446 -1.089 8.903 9.297 Atomic orbital electron populations 1.22620 0.87100 1.02580 1.01206 1.65519 1.08582 1.15423 1.33314 1.20739 0.90438 0.89622 0.99075 1.21153 0.97178 0.95273 1.04363 1.69379 1.04329 1.30557 1.16355 1.24796 1.00529 0.85068 0.99285 1.44889 1.13472 1.18691 1.30331 1.20188 0.97060 0.85812 0.88851 1.21121 1.32224 1.13945 0.91415 0.90133 1.24829 0.95330 0.97516 0.94730 1.69871 1.43069 1.37841 1.01175 0.86855 0.81281 0.83179 0.78531 1.19596 1.20413 1.18840 1.21294 0.92803 1.02284 1.00752 1.20841 0.90287 0.98451 0.90617 0.94743 0.90793 0.90853 0.92565 0.89613 0.77877 0.93146 0.94116 0.91955 0.89644 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.35 60.07 0.56 0.72 15 2 N -0.50 -7.69 5.81 -243.14 -1.41 -9.10 15 3 C 0.13 2.10 6.63 -4.05 -0.03 2.07 15 4 C -0.05 -0.98 8.13 -82.55 -0.67 -1.65 15 5 N -0.49 -10.42 11.24 -10.66 -0.12 -10.54 15 6 C 0.18 3.79 12.56 -90.34 -1.13 2.66 15 7 N -0.40 -8.73 2.73 -115.12 -0.31 -9.04 15 8 C 0.20 4.59 4.98 -5.19 -0.03 4.56 15 9 C -0.55 -14.82 9.94 -34.44 -0.34 -15.16 15 10 H 0.08 2.47 8.06 -52.49 -0.42 2.04 15 11 C 0.08 2.19 5.47 -17.82 -0.10 2.09 15 12 N -0.88 -25.59 13.96 55.43 0.77 -24.81 15 13 Si 0.88 19.56 27.47 -169.99 -4.67 14.89 15 14 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 16 H -0.26 -5.55 6.54 56.52 0.37 -5.18 15 17 C -0.05 -1.06 7.78 -81.45 -0.63 -1.70 15 18 C 0.13 2.22 6.63 -4.14 -0.03 2.19 15 19 H 0.03 0.39 7.89 -51.93 -0.41 -0.02 15 20 H 0.07 0.76 8.14 -51.93 -0.42 0.33 15 21 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 22 H 0.06 0.84 7.76 -51.93 -0.40 0.44 15 23 H 0.09 1.27 8.14 -51.93 -0.42 0.84 15 24 H 0.20 3.43 8.06 -52.49 -0.42 3.00 15 25 H 0.05 1.08 7.19 -51.93 -0.37 0.71 15 26 H 0.04 0.90 7.57 -51.93 -0.39 0.51 15 27 H 0.27 7.26 8.31 -40.82 -0.34 6.92 15 28 H 0.09 1.43 8.14 -51.93 -0.42 1.00 15 29 H 0.07 1.13 7.67 -51.93 -0.40 0.73 15 LS Contribution 248.50 15.07 3.74 3.74 Total: -1.00 -30.74 248.50 -8.08 -38.81 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -3.68 Total: 0.27 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -2.40 Total: -4.21 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -1.07 Total: -53.50 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.67 Total: 14.89 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.74 -8.08 -38.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259583214.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.150 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds