Wall clock time and date at job start Mon Mar 30 2020 02:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48134 * 110.99790 * 2 1 4 4 C 1.51204 * 105.63956 * 214.04396 * 3 2 1 5 5 N 1.34045 * 143.56385 * 197.20901 * 4 3 2 6 6 C 1.30506 * 109.37239 * 180.02562 * 5 4 3 7 7 N 1.35074 * 108.69420 * 0.02562 * 6 5 4 8 8 C 1.46503 * 126.41002 * 179.97438 * 7 6 5 9 9 C 1.50707 * 109.47063 * 265.02539 * 8 7 6 10 10 H 1.08000 * 119.99631 * 359.97438 * 9 8 7 11 11 C 1.37871 * 119.99865 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99771 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00537 * 359.97438 * 11 9 8 14 14 H 1.48492 * 109.47411 * 89.99747 * 13 11 9 15 15 H 1.48496 * 109.47420 * 210.00379 * 13 11 9 16 16 H 1.48507 * 109.46953 * 330.00006 * 13 11 9 17 17 C 1.34951 * 108.61177 * 17.28593 * 4 3 2 18 18 C 1.48152 * 111.00118 * 245.70439 * 2 1 3 19 19 H 1.08999 * 109.47008 * 60.12644 * 1 2 3 20 20 H 1.08999 * 109.46809 * 180.12608 * 1 2 3 21 21 H 1.08999 * 109.46846 * 300.12227 * 1 2 3 22 22 H 1.09002 * 110.22943 * 333.11233 * 3 2 1 23 23 H 1.09000 * 110.22696 * 94.98207 * 3 2 1 24 24 H 1.07997 * 125.65391 * 179.97438 * 6 5 4 25 25 H 1.08999 * 109.47679 * 25.02395 * 8 7 6 26 26 H 1.09003 * 109.47116 * 145.02889 * 8 7 6 27 27 H 0.97000 * 119.99830 * 179.97438 * 12 11 9 28 28 H 1.08999 * 110.23952 * 264.90234 * 18 2 1 29 29 H 1.09003 * 110.23939 * 26.79317 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9998 1.3830 0.0000 4 6 3.2723 1.3312 -0.8151 5 7 4.4067 1.9916 -1.0866 6 6 5.1059 1.3125 -1.9545 7 7 4.4307 0.1852 -2.2674 8 6 4.8620 -0.8549 -3.2045 9 6 4.2569 -0.5925 -4.5596 10 1 3.6150 0.2633 -4.7077 11 6 4.5221 -1.4455 -5.6098 12 7 3.9936 -1.2167 -6.7922 13 14 5.6319 -2.9260 -5.3535 14 1 4.8127 -4.0926 -4.9378 15 1 6.3360 -3.2424 -6.6221 16 1 6.6294 -2.6198 -4.2968 17 6 3.2694 0.1971 -1.5465 18 6 2.0000 -0.5691 -1.2606 19 1 -0.3633 0.5119 -0.8911 20 1 -0.3633 -1.0277 0.0023 21 1 -0.3633 0.5157 0.8889 22 1 1.2832 2.0617 -0.4625 23 1 2.2178 1.7030 1.0189 24 1 6.0649 1.6040 -2.3566 25 1 5.9491 -0.8445 -3.2839 26 1 4.5335 -1.8292 -2.8424 27 1 4.1805 -1.8166 -7.5312 28 1 2.2199 -1.6289 -1.1327 29 1 1.2828 -0.4283 -2.0694 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259583214.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:58 Heat of formation + Delta-G solvation = 69.192292 kcal Electronic energy + Delta-G solvation = -13325.744932 eV Core-core repulsion = 11056.940934 eV Total energy + Delta-G solvation = -2268.803998 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.26543 -38.96087 -35.90442 -34.12171 -31.68054 -30.14020 -28.70438 -26.69850 -24.77647 -23.02275 -21.17192 -20.86768 -19.30827 -17.68560 -16.98702 -16.29589 -16.11206 -15.88851 -15.22153 -14.78310 -14.38084 -14.14500 -13.97036 -13.64390 -13.36961 -12.85693 -12.82278 -12.60048 -12.37124 -12.14585 -11.86860 -10.96984 -10.78882 -10.35788 -9.93818 -8.94090 -8.45553 -6.58687 1.12509 1.34375 1.35195 1.45422 1.90314 2.08037 2.23146 2.87253 2.90224 3.17739 3.50928 4.10665 4.28234 4.30724 4.38926 4.47393 4.51978 4.60256 4.64276 4.81428 4.94543 5.03663 5.16468 5.46594 5.59288 5.74201 5.88077 5.98341 6.41046 6.48868 7.06328 7.11510 8.70837 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.039307 B = 0.009402 C = 0.008434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.167892 B = 2977.436621 C = 3319.208143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.503 5.503 3 C 0.133 3.867 4 C -0.062 4.062 5 N -0.507 5.507 6 C 0.177 3.823 7 N -0.413 5.413 8 C 0.211 3.789 9 C -0.557 4.557 10 H 0.025 0.975 11 C 0.024 3.976 12 N -0.936 5.936 13 Si 0.953 3.047 14 H -0.261 1.261 15 H -0.278 1.278 16 H -0.237 1.237 17 C -0.081 4.081 18 C 0.129 3.871 19 H 0.033 0.967 20 H 0.088 0.912 21 H 0.097 0.903 22 H 0.068 0.932 23 H 0.103 0.897 24 H 0.233 0.767 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.274 0.726 28 H 0.092 0.908 29 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.610 -1.383 11.382 11.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.227 5.227 3 C 0.004 3.996 4 C -0.193 4.193 5 N -0.226 5.226 6 C -0.104 4.104 7 N -0.091 5.091 8 C 0.089 3.911 9 C -0.595 4.595 10 H 0.043 0.957 11 C -0.176 4.176 12 N -0.574 5.574 13 Si 0.774 3.226 14 H -0.185 1.185 15 H -0.203 1.203 16 H -0.160 1.160 17 C -0.201 4.201 18 C 0.001 3.999 19 H 0.052 0.948 20 H 0.106 0.894 21 H 0.116 0.884 22 H 0.086 0.914 23 H 0.121 0.879 24 H 0.249 0.751 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.183 -1.127 11.902 12.153 hybrid contribution -0.051 -0.640 -1.893 1.999 sum -2.234 -1.766 10.009 10.406 Atomic orbital electron populations 1.22773 0.84634 1.03964 1.02319 1.65578 1.10841 1.14662 1.31654 1.20893 0.88788 0.90489 0.99401 1.21952 0.97870 0.94846 1.04637 1.69394 1.05132 1.31045 1.17049 1.25493 1.01424 0.84543 0.98907 1.44958 1.14340 1.19071 1.30719 1.20017 0.97761 0.86607 0.86672 1.21208 1.31813 1.12365 0.94136 0.95699 1.25842 0.96869 1.01012 0.93905 1.70030 1.45119 1.39680 1.02527 0.85644 0.79389 0.78392 0.79200 1.18535 1.20287 1.15951 1.22040 0.93529 1.03618 1.00873 1.20911 0.88835 0.98679 0.91516 0.94821 0.89378 0.88448 0.91418 0.87921 0.75114 0.91059 0.92876 0.91630 0.88976 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.35 127.69 1.19 1.41 15 2 N -0.50 -14.34 5.81 -923.16 -5.36 -19.70 15 3 C 0.13 4.06 6.63 85.48 0.57 4.62 15 4 C -0.06 -2.48 8.13 41.62 0.34 -2.14 15 5 N -0.51 -21.44 11.24 -187.65 -2.11 -23.55 15 6 C 0.18 7.19 12.56 180.25 2.26 9.45 15 7 N -0.41 -18.01 2.73 -518.13 -1.41 -19.42 15 8 C 0.21 9.36 4.98 85.63 0.43 9.79 15 9 C -0.56 -30.61 9.94 25.60 0.25 -30.35 15 10 H 0.02 1.60 8.06 -2.91 -0.02 1.57 15 11 C 0.02 1.30 5.47 84.65 0.46 1.77 15 12 N -0.94 -55.46 13.96 21.45 0.30 -55.16 15 13 Si 0.95 39.26 27.47 68.60 1.88 41.14 15 14 H -0.26 -10.31 7.11 99.48 0.71 -9.60 15 15 H -0.28 -11.33 7.11 99.48 0.71 -10.63 15 16 H -0.24 -8.66 6.54 99.48 0.65 -8.01 15 17 C -0.08 -3.38 7.78 41.14 0.32 -3.06 15 18 C 0.13 4.43 6.63 85.41 0.57 5.00 15 19 H 0.03 0.70 7.89 -2.39 -0.02 0.68 15 20 H 0.09 1.56 8.14 -2.39 -0.02 1.54 15 21 H 0.10 1.54 8.14 -2.39 -0.02 1.52 15 22 H 0.07 1.90 7.76 -2.39 -0.02 1.89 15 23 H 0.10 2.79 8.14 -2.39 -0.02 2.77 15 24 H 0.23 7.52 8.06 -2.91 -0.02 7.50 15 25 H 0.07 2.87 7.19 -2.39 -0.02 2.86 15 26 H 0.05 2.24 7.57 -2.39 -0.02 2.22 15 27 H 0.27 14.99 8.31 -92.71 -0.77 14.22 15 28 H 0.09 2.98 8.14 -2.39 -0.02 2.96 15 29 H 0.06 2.04 7.67 -2.39 -0.02 2.02 15 Total: -1.00 -67.46 248.50 0.77 -66.69 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 1.08 Total: 13.51 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 6.39 Total: -3.52 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -8.59 Total: -117.83 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 1.88 Total: 41.14 kcal Total: -67.46 0.77 -66.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259583214.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.887 kcal (2) G-P(sol) polarization free energy of solvation -67.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds