Wall clock time and date at job start Mon Mar 30 2020 02:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.29107 * 126.00528 * 2 1 4 4 N 1.29020 * 110.25753 * 179.80790 * 3 2 1 5 5 C 1.32909 * 108.63934 * 0.02562 * 4 3 2 6 6 C 1.34403 * 126.01168 * 179.69228 * 2 1 3 7 7 C 1.50540 * 129.24973 * 0.03003 * 6 2 1 8 8 C 1.53436 * 108.31986 * 196.49408 * 7 6 2 9 9 H 1.09002 * 109.45910 * 70.30887 * 8 7 6 10 10 C 1.50702 * 109.45408 * 190.25974 * 8 7 6 11 11 H 1.07995 * 120.00482 * 5.55085 * 10 8 7 12 12 C 1.37882 * 119.99907 * 185.54592 * 10 8 7 13 13 N 1.31517 * 119.99865 * 9.54482 * 12 10 8 14 14 Si 1.86795 * 120.00090 * 189.54188 * 12 10 8 15 15 H 1.48495 * 109.47368 * 94.99523 * 14 12 10 16 16 H 1.48503 * 109.47126 * 214.99199 * 14 12 10 17 17 H 1.48502 * 109.47217 * 334.99519 * 14 12 10 18 18 C 1.53100 * 109.55082 * 310.28271 * 8 7 6 19 19 C 1.50597 * 129.16130 * 179.81309 * 5 4 3 20 20 H 1.08992 * 109.47344 * 90.02789 * 1 2 3 21 21 H 1.09010 * 109.46768 * 210.02172 * 1 2 3 22 22 H 1.08994 * 109.47205 * 330.02018 * 1 2 3 23 23 H 1.09000 * 109.69187 * 76.78788 * 7 6 2 24 24 H 1.09000 * 109.72663 * 316.21928 * 7 6 2 25 25 H 0.96996 * 119.99863 * 179.97438 * 13 12 10 26 26 H 1.09002 * 109.45858 * 310.04754 * 18 8 7 27 27 H 1.09004 * 109.45613 * 190.10650 * 18 8 7 28 28 H 1.08996 * 109.69065 * 316.24947 * 19 5 4 29 29 H 1.08999 * 109.69350 * 76.83549 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2239 1.0444 0.0000 4 7 3.4657 0.6943 0.0041 5 6 3.5327 -0.6331 0.0063 6 6 2.2552 -1.0872 0.0058 7 6 1.8722 -2.5430 0.0130 8 6 3.1000 -3.3626 0.4313 9 1 3.3090 -3.1905 1.4871 10 6 2.8260 -4.8274 0.2064 11 1 1.9112 -5.1378 -0.2763 12 6 3.7435 -5.7713 0.6168 13 7 4.7629 -5.4146 1.3673 14 14 3.5385 -7.5566 0.1070 15 1 4.3446 -7.8190 -1.1122 16 1 4.0012 -8.4415 1.2062 17 1 2.1067 -7.8287 -0.1782 18 6 4.3098 -2.9359 -0.4044 19 6 4.7469 -1.5240 0.0073 20 1 -0.3633 -0.0005 -1.0276 21 1 -0.3633 -0.8899 0.5142 22 1 -0.3633 0.8901 0.5135 23 1 1.5523 -2.8436 -0.9847 24 1 1.0619 -2.7068 0.7235 25 1 5.4081 -6.0787 1.6563 26 1 4.0407 -2.9388 -1.4607 27 1 5.1307 -3.6332 -0.2372 28 1 5.4812 -1.1449 -0.7033 29 1 5.1817 -1.5512 1.0064 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259622469.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:27 Heat of formation + Delta-G solvation = 79.784025 kcal Electronic energy + Delta-G solvation = -13539.707600 eV Core-core repulsion = 11271.362894 eV Total energy + Delta-G solvation = -2268.344706 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.81071 -36.44848 -34.47150 -32.48872 -29.79316 -29.27050 -27.48303 -25.09505 -22.76644 -21.38005 -20.75724 -18.61198 -16.83541 -16.39222 -15.89526 -14.62866 -13.90208 -13.38696 -13.25586 -13.15136 -12.81138 -12.70346 -12.27899 -11.59215 -11.23282 -11.13184 -10.86508 -10.65468 -10.25542 -10.07049 -9.88637 -9.43391 -9.31590 -8.92022 -8.39083 -8.16918 -6.09670 -4.12798 2.09310 2.78189 3.12769 3.26676 3.34878 3.36350 4.37198 4.70433 4.96984 5.06873 5.22814 5.32619 5.48194 5.67295 5.94405 6.05149 6.34372 6.38156 6.49454 6.57412 6.63353 6.90677 7.08483 7.11306 7.29075 7.63047 7.83770 7.90723 8.30577 8.90421 9.03066 9.51241 10.99259 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.054074 B = 0.009144 C = 0.008109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.687966 B = 3061.349979 C = 3452.220060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.297 5.297 3 N -0.123 5.123 4 N -0.273 5.273 5 C -0.016 4.016 6 C -0.003 4.003 7 C -0.038 4.038 8 C 0.054 3.946 9 H 0.040 0.960 10 C -0.521 4.521 11 H 0.057 0.943 12 C 0.066 3.934 13 N -0.883 5.883 14 Si 0.889 3.111 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.104 4.104 19 C -0.034 4.034 20 H 0.085 0.915 21 H 0.097 0.903 22 H 0.095 0.905 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.262 0.738 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.538 5.140 -2.502 8.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.089 5.089 3 N -0.100 5.100 4 N -0.138 5.138 5 C -0.155 4.155 6 C -0.136 4.136 7 C -0.077 4.077 8 C 0.035 3.965 9 H 0.058 0.942 10 C -0.559 4.559 11 H 0.075 0.925 12 C -0.136 4.136 13 N -0.521 5.521 14 Si 0.716 3.284 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.142 4.142 19 C -0.073 4.073 20 H 0.104 0.896 21 H 0.115 0.885 22 H 0.113 0.887 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.385 6.667 -2.409 9.541 hybrid contribution -0.346 -2.007 -0.246 2.051 sum -6.731 4.660 -2.656 8.607 Atomic orbital electron populations 1.22115 0.73693 1.05382 1.04420 1.46782 1.08709 1.05171 1.48267 1.78410 0.96388 1.11771 1.23480 1.74686 1.09495 1.12813 1.16795 1.21925 0.95965 0.90606 1.07042 1.22503 0.91147 0.92905 1.07045 1.20523 1.01770 0.83962 1.01454 1.18730 0.88135 0.93168 0.96464 0.94195 1.21075 1.05000 0.90314 1.39468 0.92472 1.24941 0.95548 0.98739 0.94381 1.69970 1.14042 1.34364 1.33732 0.86639 0.78376 0.84982 0.78365 1.20621 1.21299 1.19911 1.21695 1.01715 0.92380 0.98431 1.20124 0.91360 0.93875 1.01927 0.89608 0.88458 0.88657 0.90878 0.91669 0.92828 0.94258 0.89639 0.91704 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.93 11.28 59.84 0.67 1.61 15 2 N -0.30 -5.11 3.73 -64.01 -0.24 -5.35 15 3 N -0.12 -2.42 13.19 60.35 0.80 -1.63 15 4 N -0.27 -5.85 12.40 33.16 0.41 -5.44 15 5 C -0.02 -0.33 7.11 -83.12 -0.59 -0.92 15 6 C 0.00 -0.05 6.76 -82.49 -0.56 -0.61 15 7 C -0.04 -0.73 5.22 -27.73 -0.14 -0.87 15 8 C 0.05 1.26 1.94 -91.49 -0.18 1.08 15 9 H 0.04 1.04 8.06 -51.93 -0.42 0.62 15 10 C -0.52 -13.28 8.46 -34.44 -0.29 -13.58 15 11 H 0.06 1.42 7.77 -52.49 -0.41 1.01 15 12 C 0.07 1.74 5.10 -17.82 -0.09 1.65 15 13 N -0.88 -24.17 12.20 55.43 0.68 -23.49 15 14 Si 0.89 20.21 29.55 -169.99 -5.02 15.18 15 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 18 C -0.10 -2.30 5.11 -26.46 -0.14 -2.44 15 19 C -0.03 -0.68 6.30 -27.71 -0.17 -0.86 15 20 H 0.09 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.10 0.91 7.70 -51.92 -0.40 0.51 15 22 H 0.09 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.07 1.35 8.12 -51.93 -0.42 0.93 15 24 H 0.06 1.16 7.86 -51.93 -0.41 0.75 15 25 H 0.26 6.85 8.31 -40.82 -0.34 6.51 15 26 H 0.04 0.84 8.12 -51.93 -0.42 0.42 15 27 H 0.09 2.09 6.73 -51.93 -0.35 1.74 15 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 15 29 H 0.08 1.55 8.14 -51.93 -0.42 1.13 15 LS Contribution 244.90 15.07 3.69 3.69 Total: -1.00 -29.81 244.90 -4.83 -34.64 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -3.65 Total: -2.67 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -1.49 Total: -14.94 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 1.64 Total: -35.91 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.81 -4.83 -34.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259622469.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.423 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds