Wall clock time and date at job start Mon Mar 30 2020 02:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35279 * 125.99075 * 2 1 4 4 C 1.34303 * 107.56986 * 179.97438 * 3 2 1 5 5 C 1.40706 * 108.10636 * 359.95994 * 4 3 2 6 6 N 1.29915 * 108.19107 * 359.83188 * 5 4 3 7 7 C 1.50934 * 122.75697 * 180.21764 * 5 4 3 8 8 H 1.08997 * 109.74828 * 256.84513 * 7 5 4 9 9 C 1.50704 * 109.79144 * 136.13929 * 7 5 4 10 10 H 1.08004 * 119.99468 * 1.38635 * 9 7 5 11 11 C 1.37874 * 120.00080 * 181.37838 * 9 7 5 12 12 N 1.31515 * 120.00287 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99692 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47148 * 90.00091 * 13 11 9 15 15 H 1.48504 * 109.47076 * 209.99966 * 13 11 9 16 16 H 1.48497 * 109.47192 * 330.00228 * 13 11 9 17 17 N 1.47315 * 108.04948 * 16.47848 * 7 5 4 18 18 C 1.46855 * 111.73639 * 307.91242 * 17 7 5 19 19 C 1.50938 * 129.19387 * 179.80058 * 4 3 2 20 20 H 1.09001 * 109.47060 * 90.00663 * 1 2 3 21 21 H 1.09004 * 109.47073 * 210.00152 * 1 2 3 22 22 H 1.09000 * 109.47212 * 330.00235 * 1 2 3 23 23 H 1.07999 * 126.21840 * 359.97305 * 3 2 1 24 24 H 0.96997 * 119.99645 * 179.97438 * 12 11 9 25 25 H 1.00904 * 110.99857 * 72.40615 * 17 7 5 26 26 H 1.08994 * 109.40386 * 312.92501 * 18 17 7 27 27 H 1.09003 * 109.40202 * 193.16714 * 18 17 7 28 28 H 1.09000 * 109.82772 * 315.53894 * 19 4 3 29 29 H 1.09007 * 109.82457 * 76.46521 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2600 1.0946 0.0000 4 6 3.5342 0.6702 0.0006 5 6 3.5265 -0.7369 0.0019 6 7 2.2901 -1.1357 0.0057 7 6 4.7913 -1.5605 0.0076 8 1 4.9765 -1.9581 -0.9902 9 6 4.6571 -2.6948 0.9907 10 1 3.7378 -2.8253 1.5424 11 6 5.7078 -3.5659 1.1858 12 7 6.8274 -3.4068 0.5144 13 14 5.5411 -4.9723 2.4039 14 1 5.0032 -6.1688 1.7080 15 1 6.8733 -5.2907 2.9777 16 1 4.6145 -4.5755 3.4943 17 7 5.9052 -0.6837 0.4085 18 6 5.9548 0.5385 -0.4042 19 6 4.8089 1.4786 -0.0033 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 1.9301 2.1229 -0.0004 24 1 7.5667 -4.0195 0.6520 25 1 5.8554 -0.4624 1.3917 26 1 5.8570 0.2771 -1.4577 27 1 6.9085 1.0414 -0.2440 28 1 4.7286 2.2921 -0.7243 29 1 4.9932 1.8828 0.9922 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259635704.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:54 Heat of formation + Delta-G solvation = 83.722335 kcal Electronic energy + Delta-G solvation = -13550.706315 eV Core-core repulsion = 11282.532387 eV Total energy + Delta-G solvation = -2268.173928 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.64912 -36.29289 -32.80244 -32.12648 -30.72581 -27.93741 -26.94154 -24.80628 -22.05226 -21.60442 -19.91391 -18.32402 -16.45628 -15.98006 -14.89529 -14.47417 -14.14215 -13.70533 -13.62456 -12.87417 -12.65512 -12.29280 -12.16000 -11.64030 -11.28474 -11.14815 -10.76867 -10.62613 -10.32308 -9.89710 -9.64150 -9.06585 -8.47623 -8.29335 -7.60987 -6.96247 -5.84247 -3.96629 2.56061 3.14956 3.39682 3.45645 3.49495 3.65437 4.54718 4.92440 5.22865 5.32434 5.37637 5.55413 5.64216 5.73627 5.85771 6.02084 6.14226 6.30353 6.49488 6.65008 6.77976 6.79957 7.45856 7.53934 7.66303 7.99739 8.14858 8.46845 8.74335 8.97592 9.14611 9.70384 11.20379 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.033625 B = 0.011702 C = 0.009074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.525008 B = 2392.236995 C = 3085.166246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.408 5.408 3 C 0.039 3.961 4 C -0.248 4.248 5 C 0.083 3.917 6 N -0.280 5.280 7 C 0.294 3.706 8 H 0.059 0.941 9 C -0.525 4.525 10 H 0.060 0.940 11 C 0.080 3.920 12 N -0.850 5.850 13 Si 0.888 3.112 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.276 1.276 17 N -0.643 5.643 18 C 0.056 3.944 19 C -0.074 4.074 20 H 0.063 0.937 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.160 0.840 24 H 0.257 0.743 25 H 0.329 0.671 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.280 9.404 -0.880 11.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.191 5.191 3 C -0.104 4.104 4 C -0.260 4.260 5 C -0.089 4.089 6 N -0.099 5.099 7 C 0.184 3.816 8 H 0.076 0.924 9 C -0.565 4.565 10 H 0.078 0.922 11 C -0.126 4.126 12 N -0.485 5.485 13 Si 0.716 3.284 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.201 1.201 17 N -0.271 5.271 18 C -0.075 4.075 19 C -0.115 4.115 20 H 0.081 0.919 21 H 0.101 0.899 22 H 0.093 0.907 23 H 0.177 0.823 24 H 0.067 0.933 25 H 0.147 0.853 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.582 8.004 -1.312 11.102 hybrid contribution -0.580 0.657 1.021 1.345 sum -8.162 8.661 -0.291 11.904 Atomic orbital electron populations 1.21580 0.75785 1.03442 1.02202 1.48753 1.05864 1.04136 1.60330 1.21664 0.91219 0.92750 1.04804 1.20218 0.94318 0.94900 1.16590 1.24501 0.95572 0.94014 0.94830 1.77152 1.02027 1.06013 1.24741 1.17981 0.76989 0.88200 0.98400 0.92381 1.20893 1.00249 1.10386 1.24961 0.92196 1.24970 0.95192 0.96910 0.95548 1.70109 1.03243 1.35685 1.39472 0.86682 0.77161 0.82877 0.81691 1.20736 1.21278 1.20089 1.61056 1.46187 1.13036 1.06812 1.22078 0.95280 0.91242 0.98924 1.20778 0.92959 0.97308 1.00453 0.91868 0.89910 0.90657 0.82286 0.93313 0.85304 0.92164 0.92087 0.92395 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.41 11.47 59.85 0.69 2.10 15 2 N -0.41 -7.57 4.03 -68.33 -0.28 -7.84 15 3 C 0.04 0.67 11.46 -17.42 -0.20 0.47 15 4 C -0.25 -4.99 5.96 -104.96 -0.63 -5.62 15 5 C 0.08 1.99 6.49 -82.36 -0.53 1.46 15 6 N -0.28 -6.62 12.42 33.76 0.42 -6.20 15 7 C 0.29 7.73 2.71 -69.67 -0.19 7.55 15 8 H 0.06 1.68 8.14 -51.93 -0.42 1.26 15 9 C -0.53 -14.97 8.57 -34.44 -0.30 -15.27 15 10 H 0.06 1.76 7.69 -52.48 -0.40 1.36 15 11 C 0.08 2.26 5.39 -17.82 -0.10 2.17 15 12 N -0.85 -24.69 12.78 55.43 0.71 -23.98 15 13 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 15 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 17 N -0.64 -15.43 5.88 -108.49 -0.64 -16.07 15 18 C 0.06 1.09 6.51 -3.57 -0.02 1.06 15 19 C -0.07 -1.29 6.42 -27.48 -0.18 -1.47 15 20 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 21 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.16 2.04 8.06 -52.49 -0.42 1.62 15 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 15 25 H 0.33 7.91 8.57 -39.29 -0.34 7.57 15 26 H 0.06 1.21 8.06 -51.93 -0.42 0.79 15 27 H 0.06 1.07 8.14 -51.93 -0.42 0.64 15 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 29 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 LS Contribution 248.61 15.07 3.75 3.75 Total: -1.00 -32.12 248.61 -6.19 -38.31 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -3.68 Total: 2.86 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -1.45 Total: -7.55 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.21 Total: -54.09 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.12 -6.19 -38.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259635704.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.034 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds