Wall clock time and date at job start Mon Mar 30 2020 02:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35279 * 125.99075 * 2 1 4 4 C 1.34303 * 107.56986 * 179.97438 * 3 2 1 5 5 C 1.40706 * 108.10636 * 359.95994 * 4 3 2 6 6 N 1.29915 * 108.19107 * 359.83188 * 5 4 3 7 7 C 1.50934 * 122.75697 * 180.21764 * 5 4 3 8 8 H 1.08997 * 109.74828 * 256.84513 * 7 5 4 9 9 C 1.50704 * 109.79144 * 136.13929 * 7 5 4 10 10 H 1.08004 * 119.99468 * 1.38635 * 9 7 5 11 11 C 1.37874 * 120.00080 * 181.37838 * 9 7 5 12 12 N 1.31515 * 120.00287 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99692 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47148 * 90.00091 * 13 11 9 15 15 H 1.48504 * 109.47076 * 209.99966 * 13 11 9 16 16 H 1.48497 * 109.47192 * 330.00228 * 13 11 9 17 17 N 1.47315 * 108.04948 * 16.47848 * 7 5 4 18 18 C 1.46855 * 111.73639 * 307.91242 * 17 7 5 19 19 C 1.50938 * 129.19387 * 179.80058 * 4 3 2 20 20 H 1.09001 * 109.47060 * 90.00663 * 1 2 3 21 21 H 1.09004 * 109.47073 * 210.00152 * 1 2 3 22 22 H 1.09000 * 109.47212 * 330.00235 * 1 2 3 23 23 H 1.07999 * 126.21840 * 359.97305 * 3 2 1 24 24 H 0.96997 * 119.99645 * 179.97438 * 12 11 9 25 25 H 1.00904 * 110.99857 * 72.40615 * 17 7 5 26 26 H 1.08994 * 109.40386 * 312.92501 * 18 17 7 27 27 H 1.09003 * 109.40202 * 193.16714 * 18 17 7 28 28 H 1.09000 * 109.82772 * 315.53894 * 19 4 3 29 29 H 1.09007 * 109.82457 * 76.46521 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2600 1.0946 0.0000 4 6 3.5342 0.6702 0.0006 5 6 3.5265 -0.7369 0.0019 6 7 2.2901 -1.1357 0.0057 7 6 4.7913 -1.5605 0.0076 8 1 4.9765 -1.9581 -0.9902 9 6 4.6571 -2.6948 0.9907 10 1 3.7378 -2.8253 1.5424 11 6 5.7078 -3.5659 1.1858 12 7 6.8274 -3.4068 0.5144 13 14 5.5411 -4.9723 2.4039 14 1 5.0032 -6.1688 1.7080 15 1 6.8733 -5.2907 2.9777 16 1 4.6145 -4.5755 3.4943 17 7 5.9052 -0.6837 0.4085 18 6 5.9548 0.5385 -0.4042 19 6 4.8089 1.4786 -0.0033 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 1.9301 2.1229 -0.0004 24 1 7.5667 -4.0195 0.6520 25 1 5.8554 -0.4624 1.3917 26 1 5.8570 0.2771 -1.4577 27 1 6.9085 1.0414 -0.2440 28 1 4.7286 2.2921 -0.7243 29 1 4.9932 1.8828 0.9922 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259635704.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:54 Heat of formation + Delta-G solvation = 59.774071 kcal Electronic energy + Delta-G solvation = -13551.744790 eV Core-core repulsion = 11282.532387 eV Total energy + Delta-G solvation = -2269.212403 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.16898 -37.97485 -34.78052 -33.54178 -32.45945 -29.62571 -28.41292 -26.63129 -23.80642 -23.15673 -21.42204 -19.96762 -18.51920 -17.41165 -16.46237 -16.26920 -15.76297 -15.29428 -15.23964 -14.37945 -14.09764 -13.88617 -13.63310 -13.18222 -12.94455 -12.78789 -12.54726 -12.50609 -11.95671 -11.81059 -11.51115 -10.90222 -10.56230 -10.01105 -9.07780 -8.73714 -7.99697 -6.19829 1.13160 1.43596 1.43896 1.54609 1.86811 1.98708 2.48874 3.21438 3.71192 3.98054 4.03323 4.32903 4.38340 4.46632 4.48508 4.67192 4.70349 4.88714 5.06653 5.15968 5.24469 5.26489 5.47772 5.76957 5.86936 6.13968 6.39605 6.55634 6.98967 7.06336 7.14483 7.50644 9.04304 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.033625 B = 0.011702 C = 0.009074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.525008 B = 2392.236995 C = 3085.166246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.403 5.403 3 C 0.063 3.937 4 C -0.276 4.276 5 C 0.049 3.951 6 N -0.330 5.330 7 C 0.299 3.701 8 H 0.011 0.989 9 C -0.543 4.543 10 H 0.041 0.959 11 C 0.037 3.963 12 N -0.878 5.878 13 Si 0.953 3.047 14 H -0.278 1.278 15 H -0.276 1.276 16 H -0.276 1.276 17 N -0.659 5.659 18 C 0.054 3.946 19 C -0.061 4.061 20 H 0.082 0.918 21 H 0.077 0.923 22 H 0.119 0.881 23 H 0.217 0.783 24 H 0.259 0.741 25 H 0.326 0.674 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.593 11.495 -0.293 14.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.186 5.186 3 C -0.082 4.082 4 C -0.288 4.288 5 C -0.122 4.122 6 N -0.151 5.151 7 C 0.189 3.811 8 H 0.029 0.971 9 C -0.582 4.582 10 H 0.059 0.941 11 C -0.167 4.167 12 N -0.513 5.513 13 Si 0.779 3.221 14 H -0.204 1.204 15 H -0.201 1.201 16 H -0.201 1.201 17 N -0.287 5.287 18 C -0.076 4.076 19 C -0.101 4.101 20 H 0.101 0.899 21 H 0.096 0.904 22 H 0.137 0.863 23 H 0.233 0.767 24 H 0.068 0.932 25 H 0.143 0.857 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.905 10.095 -0.732 13.481 hybrid contribution -0.307 0.063 0.778 0.838 sum -9.212 10.159 0.046 13.713 Atomic orbital electron populations 1.22062 0.72421 1.05400 1.04118 1.49149 1.07719 1.03244 1.58481 1.22434 0.89859 0.94527 1.01354 1.20575 0.96746 0.93270 1.18203 1.24127 0.94910 0.95968 0.97164 1.76979 1.02755 1.09214 1.26180 1.17451 0.79559 0.88852 0.95237 0.97117 1.21041 0.99663 1.12086 1.25386 0.94102 1.25662 0.94785 0.99113 0.97178 1.70219 1.03791 1.36653 1.40659 0.85672 0.77404 0.79713 0.79359 1.20383 1.20133 1.20106 1.60812 1.45677 1.15210 1.06960 1.22141 0.97769 0.90356 0.97334 1.20683 0.90360 0.96971 1.02046 0.89927 0.90405 0.86301 0.76658 0.93155 0.85694 0.93631 0.89838 0.88986 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.17 11.47 127.77 1.47 3.63 15 2 N -0.40 -14.00 4.03 -370.11 -1.49 -15.49 15 3 C 0.06 1.94 11.46 83.26 0.95 2.89 15 4 C -0.28 -10.64 5.96 -20.08 -0.12 -10.76 15 5 C 0.05 2.39 6.49 43.52 0.28 2.67 15 6 N -0.33 -15.78 12.42 -47.11 -0.58 -16.36 15 7 C 0.30 16.55 2.71 43.42 0.12 16.67 15 8 H 0.01 0.70 8.14 -2.39 -0.02 0.68 15 9 C -0.54 -32.32 8.57 25.60 0.22 -32.10 15 10 H 0.04 2.52 7.69 -2.91 -0.02 2.50 15 11 C 0.04 2.12 5.39 84.65 0.46 2.58 15 12 N -0.88 -52.50 12.78 21.45 0.27 -52.23 15 13 Si 0.95 45.71 29.54 68.60 2.03 47.73 15 14 H -0.28 -13.10 7.11 99.48 0.71 -12.39 15 15 H -0.28 -12.68 7.11 99.48 0.71 -11.97 15 16 H -0.28 -13.13 7.11 99.48 0.71 -12.42 15 17 N -0.66 -32.54 5.88 -497.15 -2.92 -35.46 15 18 C 0.05 2.09 6.51 86.49 0.56 2.65 15 19 C -0.06 -1.94 6.42 30.11 0.19 -1.75 15 20 H 0.08 1.51 8.14 -2.39 -0.02 1.49 15 21 H 0.08 1.78 8.14 -2.38 -0.02 1.76 15 22 H 0.12 1.59 8.14 -2.39 -0.02 1.57 15 23 H 0.22 4.07 8.06 -2.91 -0.02 4.05 15 24 H 0.26 14.66 8.31 -92.71 -0.77 13.88 15 25 H 0.33 16.07 8.57 -89.69 -0.77 15.30 15 26 H 0.05 1.86 8.06 -2.39 -0.02 1.84 15 27 H 0.08 2.82 8.14 -2.39 -0.02 2.80 15 28 H 0.09 2.33 8.14 -2.39 -0.02 2.31 15 29 H 0.07 2.15 8.14 -2.38 -0.02 2.13 15 Total: -1.00 -73.61 248.61 1.81 -71.80 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.38 Total: 13.53 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 4.13 Total: -13.51 kcal Atomic # 7 Polarization: -114.82 SS G_CDS: -4.73 Total: -119.55 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -73.61 1.81 -71.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259635704.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.573 kcal (2) G-P(sol) polarization free energy of solvation -73.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds