Wall clock time and date at job start Mon Mar 30 2020 02:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46948 * 2 1 4 4 N 1.46500 * 109.47432 * 179.97438 * 3 2 1 5 5 C 1.36337 * 125.63815 * 90.01968 * 4 3 2 6 6 C 1.50706 * 125.88991 * 0.02562 * 5 4 3 7 7 C 1.34851 * 108.22140 * 179.74019 * 5 4 3 8 8 C 1.40895 * 107.41390 * 0.26138 * 7 5 4 9 9 C 1.34844 * 107.41851 * 0.02562 * 8 7 5 10 10 C 1.50701 * 125.89094 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47121 * 84.97507 * 10 9 8 12 12 H 1.08000 * 120.00249 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99669 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00347 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99726 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47395 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46916 * 119.99852 * 15 13 11 18 18 H 1.48504 * 109.46969 * 239.99953 * 15 13 11 19 19 H 1.09000 * 109.46885 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47571 * 300.00080 * 1 2 3 21 21 H 1.09003 * 109.46898 * 60.00303 * 1 2 3 22 22 H 1.09002 * 109.47571 * 239.99920 * 2 1 3 23 23 H 1.08998 * 109.47497 * 119.99300 * 2 1 3 24 24 H 1.09002 * 109.47050 * 59.99601 * 3 2 1 25 25 H 1.09003 * 109.47074 * 299.99590 * 3 2 1 26 26 H 1.09001 * 109.46953 * 269.71134 * 6 5 4 27 27 H 1.09000 * 109.47318 * 29.70732 * 6 5 4 28 28 H 1.09000 * 109.47161 * 149.71363 * 6 5 4 29 29 H 1.07994 * 126.29337 * 180.24418 * 7 5 4 30 30 H 1.08001 * 126.29062 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.46876 * 204.97720 * 10 9 8 32 32 H 1.08995 * 109.46988 * 324.96971 * 10 9 8 33 33 H 0.96994 * 120.00533 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2998 1.4429 -1.1071 6 6 3.8229 1.4437 -2.5367 7 6 5.5863 1.4488 -0.7029 8 6 5.5856 1.4461 0.7060 9 6 4.2989 1.4381 1.1091 10 6 3.8207 1.4333 2.5382 11 6 3.7713 2.8476 3.0562 12 1 4.0578 3.6679 2.4148 13 6 3.3612 3.0942 4.3493 14 7 3.0127 2.0953 5.1305 15 14 3.3005 4.8473 4.9916 16 1 3.7385 5.7813 3.9234 17 1 1.9110 5.1777 5.3982 18 1 4.2033 4.9765 6.1636 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5137 0.8900 24 1 1.6765 1.9564 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 3.7125 0.4162 -2.8834 27 1 2.8613 1.9533 -2.5987 28 1 4.5499 1.9621 -3.1619 29 1 6.4570 1.4542 -1.3417 30 1 6.4559 1.4489 1.3457 31 1 2.8245 0.9935 2.5865 32 1 4.5068 0.8464 3.1489 33 1 2.7238 2.2687 6.0400 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259638151.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:16 Heat of formation + Delta-G solvation = 19.800998 kcal Electronic energy + Delta-G solvation = -13550.307766 eV Core-core repulsion = 11382.902344 eV Total energy + Delta-G solvation = -2167.405422 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.50118 -34.70978 -33.35212 -31.33896 -30.50925 -28.60842 -25.44520 -24.71712 -22.21874 -21.49963 -19.47916 -18.01124 -16.34281 -15.53231 -14.88516 -14.38693 -14.37168 -13.26997 -13.04287 -12.87941 -12.49328 -12.34045 -11.98757 -11.64653 -11.62189 -11.40625 -11.15145 -11.03614 -10.84666 -10.65732 -10.50147 -10.41059 -9.67296 -9.34746 -8.43363 -7.76287 -6.88185 -6.02590 -4.07534 3.08952 3.28974 3.36922 3.42775 3.72700 3.93790 4.46027 5.08509 5.16264 5.30025 5.34456 5.51670 5.55908 5.61872 5.82305 5.84886 5.97049 6.09242 6.12819 6.22970 6.34035 6.39900 6.48135 6.57261 7.07354 7.23146 7.46849 7.53480 7.92127 8.02050 8.22461 8.28561 8.43238 8.97957 9.56573 11.05323 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.028378 B = 0.010012 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.436728 B = 2795.989838 C = 3346.541015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C 0.106 3.894 4 N -0.441 5.441 5 C -0.026 4.026 6 C -0.071 4.071 7 C -0.198 4.198 8 C -0.228 4.228 9 C 0.079 3.921 10 C 0.077 3.923 11 C -0.509 4.509 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.283 1.283 19 H 0.056 0.944 20 H 0.060 0.940 21 H 0.052 0.948 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.097 0.903 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.023 0.977 32 H 0.039 0.961 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.908 -2.625 -11.202 11.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C -0.016 4.016 4 N -0.118 5.118 5 C -0.136 4.136 6 C -0.129 4.129 7 C -0.224 4.224 8 C -0.251 4.251 9 C -0.033 4.033 10 C 0.040 3.960 11 C -0.547 4.547 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.722 3.278 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.209 1.209 19 H 0.075 0.925 20 H 0.079 0.921 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.116 0.884 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.334 -2.653 -11.043 11.837 hybrid contribution 0.025 0.969 0.480 1.082 sum -3.309 -1.683 -10.563 11.197 Atomic orbital electron populations 1.21686 0.95072 1.01785 1.02002 1.21870 0.96088 0.96717 1.02864 1.21753 0.78454 0.97540 1.03899 1.43961 1.05156 1.57197 1.05468 1.20029 0.90700 1.14383 0.88469 1.20128 1.00694 1.01269 0.90809 1.20486 0.94514 1.12159 0.95234 1.20506 0.95772 1.14761 0.94085 1.21371 0.89804 1.02165 0.90001 1.17905 0.96665 0.97874 0.83582 1.21135 1.44220 0.92081 0.97287 0.92422 1.25003 0.95355 0.97179 0.96797 1.69959 1.45153 1.30627 1.07675 0.86497 0.77591 0.84831 0.78930 1.19688 1.21044 1.20865 0.92530 0.92066 0.92910 0.92064 0.90936 0.88419 0.90659 0.92313 0.92730 0.91264 0.86155 0.85700 0.95850 0.94268 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 37.16 0.37 -1.42 16 2 C -0.14 -2.04 6.26 -26.73 -0.17 -2.21 16 3 C 0.11 1.81 5.47 -4.04 -0.02 1.78 16 4 N -0.44 -8.94 2.75 -107.98 -0.30 -9.24 16 5 C -0.03 -0.49 6.89 -81.79 -0.56 -1.06 16 6 C -0.07 -0.98 10.11 36.01 0.36 -0.61 16 7 C -0.20 -3.91 10.77 -39.78 -0.43 -4.34 16 8 C -0.23 -5.12 10.76 -39.78 -0.43 -5.54 16 9 C 0.08 1.85 6.08 -81.79 -0.50 1.35 16 10 C 0.08 2.04 5.05 -29.04 -0.15 1.89 16 11 C -0.51 -14.45 9.09 -34.44 -0.31 -14.76 16 12 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 15 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.10 1.86 7.54 -51.93 -0.39 1.47 16 25 H 0.08 1.10 7.02 -51.93 -0.36 0.73 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.69 7.05 -51.93 -0.37 0.32 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 30 H 0.13 2.72 8.06 -52.49 -0.42 2.29 16 31 H 0.02 0.63 7.49 -51.93 -0.39 0.24 16 32 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 279.13 15.07 4.21 4.21 Total: -1.00 -30.51 279.13 -7.59 -38.10 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.28 Total: -0.77 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: -1.93 Total: -23.38 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.44 Total: -34.83 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.51 -7.59 -38.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259638151.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.900 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds