Wall clock time and date at job start Mon Mar 30 2020 02:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46948 * 2 1 4 4 N 1.46500 * 109.47432 * 179.97438 * 3 2 1 5 5 C 1.36337 * 125.63815 * 90.01968 * 4 3 2 6 6 C 1.50706 * 125.88991 * 0.02562 * 5 4 3 7 7 C 1.34851 * 108.22140 * 179.74019 * 5 4 3 8 8 C 1.40895 * 107.41390 * 0.26138 * 7 5 4 9 9 C 1.34844 * 107.41851 * 0.02562 * 8 7 5 10 10 C 1.50701 * 125.89094 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47121 * 84.97507 * 10 9 8 12 12 H 1.08000 * 120.00249 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99669 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00347 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99726 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47395 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46916 * 119.99852 * 15 13 11 18 18 H 1.48504 * 109.46969 * 239.99953 * 15 13 11 19 19 H 1.09000 * 109.46885 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47571 * 300.00080 * 1 2 3 21 21 H 1.09003 * 109.46898 * 60.00303 * 1 2 3 22 22 H 1.09002 * 109.47571 * 239.99920 * 2 1 3 23 23 H 1.08998 * 109.47497 * 119.99300 * 2 1 3 24 24 H 1.09002 * 109.47050 * 59.99601 * 3 2 1 25 25 H 1.09003 * 109.47074 * 299.99590 * 3 2 1 26 26 H 1.09001 * 109.46953 * 269.71134 * 6 5 4 27 27 H 1.09000 * 109.47318 * 29.70732 * 6 5 4 28 28 H 1.09000 * 109.47161 * 149.71363 * 6 5 4 29 29 H 1.07994 * 126.29337 * 180.24418 * 7 5 4 30 30 H 1.08001 * 126.29062 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.46876 * 204.97720 * 10 9 8 32 32 H 1.08995 * 109.46988 * 324.96971 * 10 9 8 33 33 H 0.96994 * 120.00533 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2998 1.4429 -1.1071 6 6 3.8229 1.4437 -2.5367 7 6 5.5863 1.4488 -0.7029 8 6 5.5856 1.4461 0.7060 9 6 4.2989 1.4381 1.1091 10 6 3.8207 1.4333 2.5382 11 6 3.7713 2.8476 3.0562 12 1 4.0578 3.6679 2.4148 13 6 3.3612 3.0942 4.3493 14 7 3.0127 2.0953 5.1305 15 14 3.3005 4.8473 4.9916 16 1 3.7385 5.7813 3.9234 17 1 1.9110 5.1777 5.3982 18 1 4.2033 4.9765 6.1636 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5137 0.8900 24 1 1.6765 1.9564 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 3.7125 0.4162 -2.8834 27 1 2.8613 1.9533 -2.5987 28 1 4.5499 1.9621 -3.1619 29 1 6.4570 1.4542 -1.3417 30 1 6.4559 1.4489 1.3457 31 1 2.8245 0.9935 2.5865 32 1 4.5068 0.8464 3.1489 33 1 2.7238 2.2687 6.0400 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259638151.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:16 Heat of formation + Delta-G solvation = 3.396292 kcal Electronic energy + Delta-G solvation = -13551.019127 eV Core-core repulsion = 11382.902344 eV Total energy + Delta-G solvation = -2168.116783 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.08438 -36.00558 -35.46502 -33.00942 -31.90068 -30.36618 -26.76399 -26.56418 -24.09262 -22.74038 -21.08254 -19.56221 -18.55725 -17.22541 -16.33872 -16.11477 -15.83097 -14.59747 -14.52272 -14.40198 -14.11872 -13.78795 -13.59508 -13.16594 -13.03416 -12.83044 -12.70330 -12.62839 -12.53509 -12.29711 -12.11535 -11.70994 -11.66346 -11.47978 -10.64312 -9.35125 -8.60027 -8.15924 -6.36313 1.35929 1.37203 1.48990 1.55252 2.21420 2.24841 2.41911 3.07336 3.80721 3.94854 4.10604 4.29289 4.39031 4.49063 4.54793 4.63449 4.81538 4.83109 4.88734 4.90539 5.05013 5.11574 5.15726 5.22031 5.27254 5.36349 5.54679 5.68246 5.77104 6.10700 6.38030 6.58309 6.73881 6.79406 7.32719 8.86216 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.028378 B = 0.010012 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.436728 B = 2795.989838 C = 3346.541015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.101 3.899 4 N -0.444 5.444 5 C -0.008 4.008 6 C -0.070 4.070 7 C -0.218 4.218 8 C -0.241 4.241 9 C 0.036 3.964 10 C 0.093 3.907 11 C -0.526 4.526 12 H 0.047 0.953 13 C 0.008 3.992 14 N -0.927 5.927 15 Si 0.965 3.035 16 H -0.269 1.269 17 H -0.272 1.272 18 H -0.275 1.275 19 H 0.071 0.929 20 H 0.047 0.953 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.038 0.962 24 H 0.067 0.933 25 H 0.110 0.890 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.149 0.851 30 H 0.117 0.883 31 H 0.005 0.995 32 H 0.007 0.993 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.680 -1.796 -13.530 14.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.167 4.167 3 C -0.020 4.020 4 N -0.121 5.121 5 C -0.118 4.118 6 C -0.127 4.127 7 C -0.243 4.243 8 C -0.265 4.265 9 C -0.076 4.076 10 C 0.055 3.945 11 C -0.564 4.564 12 H 0.065 0.935 13 C -0.190 4.190 14 N -0.567 5.567 15 Si 0.789 3.211 16 H -0.194 1.194 17 H -0.198 1.198 18 H -0.200 1.200 19 H 0.090 0.910 20 H 0.066 0.934 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.057 0.943 24 H 0.085 0.915 25 H 0.128 0.872 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.109 0.891 29 H 0.166 0.834 30 H 0.135 0.865 31 H 0.023 0.977 32 H 0.025 0.975 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.118 -1.833 -13.375 14.114 hybrid contribution 0.277 0.663 1.154 1.359 sum -3.841 -1.169 -12.221 12.863 Atomic orbital electron populations 1.21661 0.92690 1.03005 1.02579 1.21799 0.98054 0.94903 1.01961 1.21965 0.76878 0.99107 1.04051 1.44166 1.06329 1.56532 1.05030 1.20914 0.90202 1.10543 0.90176 1.20319 1.01990 1.03257 0.87153 1.20799 0.96357 1.13195 0.93912 1.20707 0.95188 1.14594 0.96030 1.20911 0.90967 1.06118 0.89634 1.17516 0.94780 0.96444 0.85747 1.21327 1.44716 0.92625 0.97781 0.93461 1.25882 0.94588 1.01719 0.96838 1.70070 1.45520 1.32937 1.08151 0.85399 0.78161 0.79256 0.78255 1.19356 1.19774 1.20042 0.91027 0.93402 0.90389 0.90440 0.94270 0.91471 0.87164 0.90128 0.91122 0.89098 0.83364 0.86531 0.97671 0.97455 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.91 71.98 0.71 -2.46 16 2 C -0.13 -3.73 6.26 30.59 0.19 -3.54 16 3 C 0.10 3.39 5.47 86.38 0.47 3.86 16 4 N -0.44 -17.86 2.75 -495.53 -1.36 -19.22 16 5 C -0.01 -0.27 6.89 41.08 0.28 0.01 16 6 C -0.07 -1.58 10.11 71.24 0.72 -0.86 16 7 C -0.22 -8.30 10.77 22.14 0.24 -8.06 16 8 C -0.24 -11.11 10.76 22.14 0.24 -10.87 16 9 C 0.04 1.75 6.08 41.08 0.25 2.00 16 10 C 0.09 5.22 5.05 29.10 0.15 5.36 16 11 C -0.53 -31.12 9.09 25.60 0.23 -30.89 16 12 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 13 C 0.01 0.47 5.46 84.66 0.46 0.94 16 14 N -0.93 -56.12 13.29 21.45 0.28 -55.84 16 15 Si 0.96 45.03 29.54 68.60 2.03 47.05 16 16 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 19 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 20 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.07 2.65 7.54 -2.39 -0.02 2.63 16 25 H 0.11 2.88 7.02 -2.39 -0.02 2.86 16 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.07 1.41 7.05 -2.39 -0.02 1.39 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.15 4.67 8.06 -2.91 -0.02 4.65 16 30 H 0.12 5.34 8.06 -2.91 -0.02 5.32 16 31 H 0.01 0.29 7.49 -2.38 -0.02 0.28 16 32 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -68.17 279.13 5.95 -62.21 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 1.06 Total: 10.30 kcal Atomic # 6 Polarization: -48.46 SS G_CDS: 3.95 Total: -44.51 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -1.08 Total: -75.06 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -68.17 5.95 -62.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259638151.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.610 kcal (2) G-P(sol) polarization free energy of solvation -68.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds