Wall clock time and date at job start Mon Mar 30 2020 02:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00190 * 2 1 4 4 H 1.48500 * 109.47386 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46985 * 299.99904 * 3 2 1 6 6 H 1.48500 * 109.47118 * 59.99934 * 3 2 1 7 7 C 1.37878 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99905 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47160 * 179.97438 * 9 7 2 11 11 C 1.39040 * 126.27043 * 264.97335 * 10 9 7 12 12 N 1.30860 * 108.62171 * 179.97438 * 11 10 9 13 13 N 1.41444 * 108.88574 * 0.02562 * 12 11 10 14 14 C 1.37475 * 139.18571 * 180.02562 * 13 12 11 15 15 C 1.31017 * 116.41429 * 179.97438 * 14 13 12 16 16 S 1.75806 * 109.75792 * 359.97438 * 15 14 13 17 17 C 1.35084 * 107.07836 * 359.97438 * 13 12 11 18 18 H 0.97000 * 119.99863 * 0.02562 * 1 2 3 19 19 H 1.09006 * 109.47125 * 59.99773 * 9 7 2 20 20 H 1.08996 * 109.47613 * 300.00056 * 9 7 2 21 21 H 1.08006 * 125.68855 * 359.95971 * 11 10 9 22 22 H 1.07999 * 121.79165 * 359.71904 * 14 13 12 23 23 H 1.08002 * 125.11841 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6901 -4.3336 -1.1161 12 7 3.5273 -5.2585 -0.7210 13 7 3.6412 -5.2014 0.6877 14 6 4.3080 -5.8427 1.7045 15 6 4.0766 -5.4078 2.9186 16 16 2.9308 -4.0755 2.8643 17 6 2.8360 -4.2025 1.1106 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5568 0.8902 21 1 2.4039 -4.1383 -2.1391 22 1 4.9832 -6.6636 1.5132 23 1 4.5231 -5.8072 3.8172 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259640486.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:36 Heat of formation + Delta-G solvation = 109.247548 kcal Electronic energy + Delta-G solvation = -10954.568444 eV Core-core repulsion = 8896.702487 eV Total energy + Delta-G solvation = -2057.865957 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.18942 -35.96136 -33.20728 -30.59788 -29.33794 -26.82130 -23.77043 -22.23243 -20.60237 -19.88823 -17.13737 -16.28377 -15.09261 -15.03105 -14.58176 -14.48992 -13.76093 -12.47146 -12.31968 -12.06068 -11.46319 -11.30600 -10.96312 -10.71865 -10.58361 -10.19854 -9.71030 -9.52068 -9.04170 -8.83904 -8.39028 -6.76644 -5.98522 -4.03579 1.30724 1.61542 2.17090 2.58200 2.74021 3.31652 3.33781 3.40083 3.46551 4.47954 4.80373 5.29616 5.34277 5.42793 5.69756 6.02648 6.16400 6.57625 7.15196 7.24047 7.57823 7.66388 7.95591 8.06167 8.37479 9.01188 9.60241 11.09231 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.041980 B = 0.009880 C = 0.008964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.823072 B = 2833.282192 C = 3122.819365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.055 0.945 9 C 0.083 3.917 10 C -0.134 4.134 11 C 0.077 3.923 12 N -0.299 5.299 13 N -0.331 5.331 14 C 0.091 3.909 15 C -0.256 4.256 16 S 0.140 5.860 17 C -0.013 4.013 18 H 0.261 0.739 19 H 0.033 0.967 20 H 0.026 0.974 21 H 0.195 0.805 22 H 0.174 0.826 23 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.080 -9.191 4.662 11.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.046 3.954 10 C -0.153 4.153 11 C -0.106 4.106 12 N -0.121 5.121 13 N -0.105 5.105 14 C -0.041 4.041 15 C -0.395 4.395 16 S 0.394 5.606 17 C -0.246 4.246 18 H 0.071 0.929 19 H 0.051 0.949 20 H 0.044 0.956 21 H 0.212 0.788 22 H 0.191 0.809 23 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 6.170 -9.273 5.271 12.322 hybrid contribution 0.651 0.712 -0.763 1.230 sum 6.821 -8.561 4.509 11.838 Atomic orbital electron populations 1.69961 1.05960 1.26620 1.50814 1.24992 0.94851 0.99126 0.95303 0.86523 0.80175 0.83686 0.77604 1.19759 1.20952 1.20970 1.21139 0.93027 0.90002 1.50523 0.92665 1.17733 0.91428 0.88023 0.98264 1.20615 1.05130 1.02155 0.87368 1.23849 0.94039 0.92430 1.00308 1.77699 1.25103 1.25636 0.83678 1.46981 1.32611 1.24954 1.05951 1.20041 0.99406 0.99943 0.84665 1.24989 1.08869 1.05510 1.00098 1.84732 1.46280 1.34314 0.95297 1.24414 1.02788 0.98338 0.99093 0.92947 0.94878 0.95553 0.78796 0.80930 0.79509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.57 14 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 14 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 14 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 14 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 14 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 14 7 C -0.51 -14.31 9.09 -34.44 -0.31 -14.62 14 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 14 9 C 0.08 2.17 5.48 -29.04 -0.16 2.01 14 10 C -0.13 -3.04 5.37 -104.33 -0.56 -3.60 14 11 C 0.08 1.56 11.90 -17.67 -0.21 1.35 14 12 N -0.30 -5.99 12.70 30.46 0.39 -5.60 14 13 N -0.33 -6.37 4.35 -12.16 -0.05 -6.42 14 14 C 0.09 1.32 11.28 -16.74 -0.19 1.13 14 15 C -0.26 -3.30 11.12 29.01 0.32 -2.98 14 16 S 0.14 2.39 23.37 -107.50 -2.51 -0.12 14 17 C -0.01 -0.27 7.84 -16.13 -0.13 -0.39 14 18 H 0.26 7.23 8.31 -40.82 -0.34 6.89 14 19 H 0.03 0.88 8.14 -51.93 -0.42 0.45 14 20 H 0.03 0.72 8.14 -51.93 -0.42 0.30 14 21 H 0.20 3.26 8.06 -52.48 -0.42 2.84 14 22 H 0.17 1.86 8.06 -52.49 -0.42 1.43 14 23 H 0.19 1.59 8.06 -52.49 -0.42 1.16 14 LS Contribution 228.62 15.07 3.45 3.45 Total: -1.00 -31.89 228.62 -6.01 -37.90 By element: Atomic # 1 Polarization: -3.03 SS G_CDS: -1.65 Total: -4.69 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -1.33 Total: -15.55 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 1.07 Total: -37.59 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.51 Total: -0.12 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -31.89 -6.01 -37.90 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259640486.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.143 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds