Wall clock time and date at job start Mon Mar 30 2020 02:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00190 * 2 1 4 4 H 1.48500 * 109.47386 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46985 * 299.99904 * 3 2 1 6 6 H 1.48500 * 109.47118 * 59.99934 * 3 2 1 7 7 C 1.37878 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99905 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47160 * 179.97438 * 9 7 2 11 11 C 1.39040 * 126.27043 * 264.97335 * 10 9 7 12 12 N 1.30860 * 108.62171 * 179.97438 * 11 10 9 13 13 N 1.41444 * 108.88574 * 0.02562 * 12 11 10 14 14 C 1.37475 * 139.18571 * 180.02562 * 13 12 11 15 15 C 1.31017 * 116.41429 * 179.97438 * 14 13 12 16 16 S 1.75806 * 109.75792 * 359.97438 * 15 14 13 17 17 C 1.35084 * 107.07836 * 359.97438 * 13 12 11 18 18 H 0.97000 * 119.99863 * 0.02562 * 1 2 3 19 19 H 1.09006 * 109.47125 * 59.99773 * 9 7 2 20 20 H 1.08996 * 109.47613 * 300.00056 * 9 7 2 21 21 H 1.08006 * 125.68855 * 359.95971 * 11 10 9 22 22 H 1.07999 * 121.79165 * 359.71904 * 14 13 12 23 23 H 1.08002 * 125.11841 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6901 -4.3336 -1.1161 12 7 3.5273 -5.2585 -0.7210 13 7 3.6412 -5.2014 0.6877 14 6 4.3080 -5.8427 1.7045 15 6 4.0766 -5.4078 2.9186 16 16 2.9308 -4.0755 2.8643 17 6 2.8360 -4.2025 1.1106 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5568 0.8902 21 1 2.4039 -4.1383 -2.1391 22 1 4.9832 -6.6636 1.5132 23 1 4.5231 -5.8072 3.8172 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259640486.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:36 Heat of formation + Delta-G solvation = 88.757650 kcal Electronic energy + Delta-G solvation = -10955.456953 eV Core-core repulsion = 8896.702487 eV Total energy + Delta-G solvation = -2058.754466 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.65902 -37.33982 -35.26970 -32.46059 -30.68493 -28.66126 -25.55565 -23.84740 -22.15978 -21.23497 -18.68760 -18.39425 -16.59883 -16.57145 -16.28141 -15.78505 -15.19279 -14.37696 -14.08495 -13.71316 -13.25688 -12.84092 -12.68627 -12.54910 -12.17824 -11.96105 -11.59508 -11.42058 -10.69929 -10.56444 -10.23358 -8.38171 -8.03153 -6.28210 -0.02588 0.19775 0.91059 1.24241 1.40702 1.41260 1.43216 1.54223 1.75715 2.44311 3.14199 3.45610 4.13354 4.30968 4.50038 4.53303 4.78858 4.90858 5.34134 5.58973 5.63407 5.77233 5.82996 6.24033 6.54753 6.82498 7.39873 8.93184 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.041980 B = 0.009880 C = 0.008964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.823072 B = 2833.282192 C = 3122.819365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.046 0.954 9 C 0.098 3.902 10 C -0.182 4.182 11 C 0.074 3.926 12 N -0.308 5.308 13 N -0.330 5.330 14 C 0.061 3.939 15 C -0.213 4.213 16 S 0.129 5.871 17 C -0.027 4.027 18 H 0.265 0.735 19 H 0.014 0.986 20 H -0.002 1.002 21 H 0.215 0.785 22 H 0.217 0.783 23 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.018 -9.868 5.916 14.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.064 0.936 9 C 0.060 3.940 10 C -0.201 4.201 11 C -0.108 4.108 12 N -0.131 5.131 13 N -0.104 5.104 14 C -0.066 4.066 15 C -0.350 4.350 16 S 0.382 5.618 17 C -0.263 4.263 18 H 0.074 0.926 19 H 0.033 0.967 20 H 0.016 0.984 21 H 0.232 0.768 22 H 0.233 0.767 23 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 8.126 -9.980 6.524 14.429 hybrid contribution 0.084 0.825 -0.989 1.290 sum 8.210 -9.155 5.535 13.486 Atomic orbital electron populations 1.70072 1.07454 1.27773 1.51456 1.25843 0.95724 1.02742 0.94730 0.85461 0.78786 0.79159 0.78026 1.19405 1.20021 1.20143 1.21369 0.92700 0.91397 1.50611 0.93551 1.17358 0.91557 0.89176 0.95884 1.20311 1.07032 1.03191 0.89569 1.24086 0.93858 0.92062 1.00811 1.77600 1.25264 1.25666 0.84601 1.47375 1.32256 1.24590 1.06210 1.20875 1.00435 1.01380 0.83949 1.25640 1.05752 1.02165 1.01491 1.84807 1.47732 1.36583 0.92722 1.24771 1.02372 0.98375 1.00735 0.92585 0.96746 0.98389 0.76830 0.76698 0.74088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.72 13.29 21.45 0.28 -55.43 14 2 C 0.01 0.45 5.46 84.66 0.46 0.91 14 3 Si 0.96 44.65 29.54 68.60 2.03 46.68 14 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 14 5 H -0.27 -12.32 7.11 99.48 0.71 -11.61 14 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 14 7 C -0.52 -30.25 9.09 25.60 0.23 -30.02 14 8 H 0.05 2.70 7.74 -2.91 -0.02 2.68 14 9 C 0.10 5.36 5.48 29.10 0.16 5.52 14 10 C -0.18 -8.51 5.37 -19.68 -0.11 -8.62 14 11 C 0.07 3.05 11.90 85.03 1.01 4.06 14 12 N -0.31 -12.17 12.70 -57.55 -0.73 -12.91 14 13 N -0.33 -12.18 4.35 -192.37 -0.84 -13.02 14 14 C 0.06 1.55 11.28 83.75 0.94 2.49 14 15 C -0.21 -4.54 11.12 67.76 0.75 -3.78 14 16 S 0.13 4.19 23.37 -56.49 -1.32 2.87 14 17 C -0.03 -1.13 7.84 84.19 0.66 -0.47 14 18 H 0.27 14.89 8.31 -92.71 -0.77 14.12 14 19 H 0.01 0.81 8.14 -2.38 -0.02 0.79 14 20 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 14 21 H 0.22 7.36 8.06 -2.91 -0.02 7.34 14 22 H 0.22 3.52 8.06 -2.91 -0.02 3.50 14 23 H 0.24 2.43 8.06 -2.91 -0.02 2.40 14 Total: -1.00 -70.68 228.62 4.76 -65.92 By element: Atomic # 1 Polarization: -5.41 SS G_CDS: 1.22 Total: -4.20 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 4.12 Total: -29.90 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -1.28 Total: -81.36 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -1.32 Total: 2.87 kcal Total: -70.68 4.76 -65.92 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259640486.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.673 kcal (2) G-P(sol) polarization free energy of solvation -70.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds