Wall clock time and date at job start Mon Mar 30 2020 02:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00536 * 2 1 4 4 H 1.48505 * 109.46913 * 270.00080 * 3 2 1 5 5 H 1.48505 * 109.47026 * 29.99206 * 3 2 1 6 6 H 1.48492 * 109.47547 * 149.99679 * 3 2 1 7 7 C 1.37877 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00119 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00459 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.87829 * 356.16707 * 9 7 2 11 11 C 1.53661 * 109.83755 * 235.23558 * 9 7 2 12 12 C 1.52819 * 110.60186 * 296.61204 * 11 9 7 13 13 C 1.53630 * 110.68431 * 306.21644 * 12 11 9 14 14 N 1.45667 * 107.80682 * 57.40413 * 13 12 11 15 15 C 1.47105 * 116.50425 * 177.33653 * 14 13 12 16 16 C 1.55248 * 103.49177 * 162.33103 * 15 14 13 17 17 H 1.08994 * 117.91129 * 195.83174 * 16 15 14 18 18 C 1.53101 * 117.28764 * 40.54618 * 16 15 14 19 19 C 1.54985 * 104.98695 * 336.14985 * 16 15 14 20 20 H 1.08996 * 121.66628 * 221.71860 * 19 16 15 21 21 C 1.48720 * 109.35618 * 294.45398 * 14 13 12 22 22 H 1.08999 * 110.33385 * 308.86621 * 21 14 13 23 23 H 0.97004 * 119.99622 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.25035 * 176.32221 * 11 9 7 25 25 H 1.08997 * 109.24750 * 56.89822 * 11 9 7 26 26 H 1.08995 * 109.23398 * 66.52859 * 12 11 9 27 27 H 1.09000 * 109.23344 * 185.94883 * 12 11 9 28 28 H 1.09001 * 109.78995 * 176.98390 * 13 12 11 29 29 H 1.08999 * 109.79266 * 297.82646 * 13 12 11 30 30 H 1.09006 * 110.61519 * 280.83689 * 15 14 13 31 31 H 1.09000 * 110.61794 * 43.67053 * 15 14 13 32 32 H 1.08995 * 117.41405 * 15.80103 * 18 16 15 33 33 H 1.08999 * 117.40589 * 160.32301 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 1 3.8822 -0.1715 -0.0675 11 6 4.0333 -2.0187 -1.1859 12 6 3.6128 -3.4816 -1.0507 13 6 4.0426 -4.0460 0.3120 14 7 3.4458 -3.2130 1.3474 15 6 3.6869 -3.6227 2.7395 16 6 3.3487 -2.3465 3.5564 17 1 3.6920 -2.2962 4.5896 18 6 2.1266 -1.5355 3.1173 19 6 3.5345 -1.1728 2.5614 20 1 4.0166 -0.2416 2.8586 21 6 4.0276 -1.8462 1.2765 22 1 5.1163 -1.8977 1.2708 23 1 -0.4850 0.8401 -0.0004 24 1 5.1212 -1.9586 -1.2146 25 1 3.6270 -1.6121 -2.1120 26 1 2.5293 -3.5539 -1.1437 27 1 4.0810 -4.0646 -1.8439 28 1 3.6893 -5.0721 0.4146 29 1 5.1289 -4.0187 0.3969 30 1 3.0257 -4.4433 3.0181 31 1 4.7297 -3.9067 2.8810 32 1 1.4184 -2.0194 2.4448 33 1 1.6894 -0.8529 3.8459 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259652058.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:12 Heat of formation + Delta-G solvation = 43.002715 kcal Electronic energy + Delta-G solvation = -14579.481175 eV Core-core repulsion = 12413.081855 eV Total energy + Delta-G solvation = -2166.399320 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.75822 -35.47733 -32.96598 -31.25460 -29.53413 -26.70460 -25.06541 -22.85114 -21.53653 -19.82456 -19.45246 -18.15356 -16.44063 -15.69582 -14.43443 -14.18985 -13.77388 -13.42665 -12.80392 -12.54435 -12.36380 -12.20625 -12.02307 -11.63980 -10.95166 -10.84885 -10.50898 -10.43601 -10.15926 -9.67460 -9.56703 -9.30255 -9.01880 -8.73397 -8.71096 -8.27595 -7.50867 -5.84795 -3.77533 3.37948 3.46842 3.47451 4.45291 4.59090 4.68261 5.23503 5.39887 5.52143 5.65582 5.67355 5.78930 5.86770 6.01490 6.11675 6.13506 6.22537 6.32296 6.40904 6.51070 6.55970 6.62555 6.73192 6.80149 6.99087 7.04769 7.19704 7.40710 7.45073 7.75570 7.97700 8.06654 8.82577 9.29669 9.80592 11.28944 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.030160 B = 0.016789 C = 0.013317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.158952 B = 1667.337725 C = 2102.036279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.069 3.931 3 Si 0.864 3.136 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.460 4.460 8 H 0.084 0.916 9 C 0.017 3.983 10 H 0.039 0.961 11 C -0.109 4.109 12 C -0.103 4.103 13 C 0.063 3.937 14 N -0.500 5.500 15 C 0.072 3.928 16 C -0.199 4.199 17 H 0.099 0.901 18 C -0.104 4.104 19 C -0.136 4.136 20 H 0.096 0.904 21 C 0.102 3.898 22 H 0.025 0.975 23 H 0.258 0.742 24 H 0.025 0.975 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.017 0.983 30 H 0.070 0.930 31 H 0.029 0.971 32 H 0.119 0.881 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.080 -4.625 3.458 9.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.130 4.130 3 Si 0.694 3.306 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.498 4.498 8 H 0.102 0.898 9 C -0.002 4.002 10 H 0.057 0.943 11 C -0.147 4.147 12 C -0.141 4.141 13 C -0.066 4.066 14 N -0.225 5.225 15 C -0.056 4.056 16 C -0.218 4.218 17 H 0.117 0.883 18 C -0.141 4.141 19 C -0.155 4.155 20 H 0.114 0.886 21 C -0.006 4.006 22 H 0.042 0.958 23 H 0.068 0.932 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.097 0.903 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.035 0.965 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.137 0.863 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.392 -4.566 3.337 9.308 hybrid contribution 1.466 0.980 0.273 1.784 sum 8.858 -3.586 3.611 10.216 Atomic orbital electron populations 1.69889 1.06007 1.26102 1.52894 1.25004 0.94503 0.98063 0.95472 0.87060 0.80385 0.85097 0.78091 1.20967 1.22035 1.19136 1.20763 0.87769 0.94228 1.47000 0.89830 1.19280 0.98147 0.94013 0.88798 0.94294 1.21707 0.96777 0.95519 1.00746 1.21452 1.02740 0.96053 0.93875 1.21932 0.95090 0.96431 0.93110 1.63803 1.55148 1.02737 1.00769 1.22272 0.97511 0.96444 0.89422 1.23621 1.07295 0.93559 0.97318 0.88320 1.23089 0.90734 0.99634 1.00602 1.23127 1.01745 0.96537 0.94045 0.88604 1.22105 0.93094 0.88752 0.96620 0.95764 0.93239 0.95639 0.92583 0.90306 0.93829 0.92008 0.96525 0.91146 0.95298 0.86270 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.30 13.96 55.43 0.77 -26.53 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.86 21.51 27.29 -169.99 -4.64 16.87 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.27 -6.34 6.32 56.52 0.36 -5.98 16 7 C -0.46 -12.21 5.95 -34.44 -0.21 -12.41 16 8 H 0.08 2.47 7.07 -52.49 -0.37 2.10 16 9 C 0.02 0.39 2.32 -91.81 -0.21 0.17 16 10 H 0.04 0.93 4.51 -51.93 -0.23 0.70 16 11 C -0.11 -2.23 5.43 -26.48 -0.14 -2.38 16 12 C -0.10 -1.93 5.74 -26.50 -0.15 -2.09 16 13 C 0.06 1.12 5.87 -4.16 -0.02 1.09 16 14 N -0.50 -9.93 3.67 -224.47 -0.82 -10.75 16 15 C 0.07 1.25 6.61 -2.52 -0.02 1.23 16 16 C -0.20 -3.53 7.17 -88.33 -0.63 -4.17 16 17 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 18 C -0.10 -2.12 9.30 -25.27 -0.24 -2.36 16 19 C -0.14 -2.77 6.48 -88.05 -0.57 -3.34 16 20 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 21 C 0.10 2.14 2.19 -66.97 -0.15 2.00 16 22 H 0.02 0.50 7.98 -51.93 -0.41 0.08 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.08 1.66 7.11 -51.93 -0.37 1.29 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.02 0.28 7.99 -51.93 -0.41 -0.13 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.12 2.85 7.14 -51.93 -0.37 2.48 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 LS Contribution 251.36 15.07 3.79 3.79 Total: -1.00 -28.52 251.36 -8.50 -37.02 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.16 Total: 0.03 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -2.44 Total: -20.42 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.05 Total: -37.28 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.64 Total: 16.87 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.52 -8.50 -37.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259652058.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.022 kcal (2) G-P(sol) polarization free energy of solvation -28.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds