Wall clock time and date at job start Mon Mar 30 2020 02:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86801 * 119.99956 * 2 1 4 4 H 1.48495 * 109.47235 * 240.00041 * 3 2 1 5 5 H 1.48507 * 109.46991 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46904 * 119.99635 * 3 2 1 7 7 C 1.40045 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.41572 * 120.00423 * 359.97438 * 7 2 1 10 10 N 1.33446 * 119.57351 * 0.02562 * 9 7 2 11 11 C 1.31555 * 121.09924 * 179.97438 * 10 9 7 12 12 C 1.40125 * 120.09574 * 0.02562 * 11 10 9 13 13 C 1.39137 * 117.18710 * 359.97438 * 12 11 10 14 14 N 1.33033 * 119.95042 * 0.02562 * 13 12 11 15 15 S 1.76566 * 110.05593 * 179.97438 * 13 12 11 16 16 C 1.81550 * 97.01085 * 359.97438 * 15 13 12 17 17 C 1.49974 * 127.35014 * 179.97438 * 12 11 10 18 18 H 0.97007 * 120.00271 * 359.97438 * 1 2 3 19 19 H 1.08005 * 119.94987 * 180.27678 * 11 10 9 20 20 H 1.09007 * 110.31142 * 241.08751 * 16 15 13 21 21 H 1.08997 * 110.31585 * 118.91443 * 16 15 13 22 22 H 1.08999 * 108.91789 * 300.77872 * 17 12 11 23 23 H 1.09001 * 108.91529 * 59.40566 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0946 1.6964 -1.2125 5 1 1.2758 2.7465 0.0006 6 1 3.0946 1.6964 1.2126 7 6 2.0071 -1.2128 -0.0005 8 1 3.0872 -1.2128 -0.0001 9 6 1.2993 -2.4389 -0.0005 10 7 -0.0351 -2.4290 -0.0005 11 6 -0.7230 -3.5505 -0.0010 12 6 -0.0569 -4.7833 -0.0011 13 6 1.3342 -4.7543 -0.0011 14 7 1.9742 -3.5880 -0.0006 15 16 1.9741 -6.3999 -0.0003 16 6 0.3750 -7.2595 0.0009 17 6 -0.6733 -6.1505 -0.0010 18 1 -0.4851 0.8401 0.0004 19 1 -1.8026 -3.5208 -0.0056 20 1 0.2761 -7.8735 0.8961 21 1 0.2753 -7.8746 -0.8935 22 1 -1.2996 -6.2558 0.8848 23 1 -1.2970 -6.2569 -0.8886 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259777985.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:08 Heat of formation + Delta-G solvation = 37.294129 kcal Electronic energy + Delta-G solvation = -11054.833022 eV Core-core repulsion = 8993.846930 eV Total energy + Delta-G solvation = -2060.986092 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.05943 -34.82410 -33.31664 -31.77603 -29.41575 -26.33376 -23.67333 -22.69174 -20.89727 -18.21378 -16.46336 -16.00644 -14.96746 -14.85298 -14.06441 -13.48877 -12.99573 -12.73243 -12.31890 -11.92945 -11.46158 -11.42554 -11.26848 -10.80218 -10.40500 -9.89524 -9.83485 -9.34924 -9.28340 -8.30032 -7.41594 -6.94545 -6.67285 -4.83984 2.11157 2.37209 2.70229 2.87722 3.00495 3.03990 3.06480 3.81554 4.49654 5.15909 5.18063 5.50966 5.73096 5.77376 5.96784 6.17334 6.21685 6.22728 6.55663 6.92945 6.94681 7.42350 8.05176 8.34458 8.42606 8.88961 9.98531 10.13188 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.071569 B = 0.009051 C = 0.008082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.137441 B = 3092.824661 C = 3463.496587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.709 5.709 2 C 0.065 3.935 3 Si 0.924 3.076 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.390 4.390 8 H 0.096 0.904 9 C 0.402 3.598 10 N -0.504 5.504 11 C 0.190 3.810 12 C -0.367 4.367 13 C 0.203 3.797 14 N -0.574 5.574 15 S -0.130 6.130 16 C -0.092 4.092 17 C -0.045 4.045 18 H 0.279 0.721 19 H 0.132 0.868 20 H 0.094 0.906 21 H 0.094 0.906 22 H 0.066 0.934 23 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.142 -5.568 -0.003 5.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.330 5.330 2 C -0.163 4.163 3 Si 0.747 3.253 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.425 4.425 8 H 0.114 0.886 9 C 0.164 3.836 10 N -0.220 5.220 11 C 0.011 3.989 12 C -0.384 4.384 13 C -0.060 4.060 14 N -0.297 5.297 15 S 0.106 5.894 16 C -0.241 4.241 17 C -0.085 4.085 18 H 0.090 0.910 19 H 0.149 0.851 20 H 0.113 0.887 21 H 0.112 0.888 22 H 0.084 0.916 23 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.594 -4.957 -0.003 4.992 hybrid contribution -1.437 0.367 0.001 1.483 sum -2.031 -4.590 -0.002 5.019 Atomic orbital electron populations 1.70104 1.07384 1.28684 1.26796 1.26143 0.95115 1.01570 0.93457 0.86113 0.79870 0.79054 0.80282 1.18574 1.19957 1.18581 1.19364 0.94942 0.87312 1.40876 0.88615 1.19920 0.85511 0.89833 0.88303 1.69132 1.08670 1.25869 1.18324 1.22653 0.99130 0.86768 0.90326 1.21246 0.94740 0.96003 1.26395 1.22582 0.91496 0.96439 0.95454 1.68271 1.39881 0.96392 1.25152 1.85225 1.12303 0.98750 1.93135 1.23689 0.95012 1.00025 1.05407 1.19698 0.96945 0.89840 1.01970 0.90996 0.85097 0.88746 0.88756 0.91560 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.34 11.45 55.55 0.64 -17.70 14 2 C 0.06 1.62 5.50 -17.36 -0.10 1.53 14 3 Si 0.92 18.27 29.56 -169.99 -5.02 13.24 14 4 H -0.26 -5.11 7.11 56.52 0.40 -4.70 14 5 H -0.27 -5.20 7.11 56.52 0.40 -4.80 14 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 14 7 C -0.39 -10.74 9.38 -37.63 -0.35 -11.09 14 8 H 0.10 2.53 7.85 -52.48 -0.41 2.11 14 9 C 0.40 11.59 7.38 -158.49 -1.17 10.42 14 10 N -0.50 -13.99 7.87 -12.49 -0.10 -14.09 14 11 C 0.19 4.55 11.26 -16.96 -0.19 4.35 14 12 C -0.37 -8.26 6.06 -103.93 -0.63 -8.89 14 13 C 0.20 5.04 7.61 -16.70 -0.13 4.91 14 14 N -0.57 -16.13 10.40 -11.55 -0.12 -16.25 14 15 S -0.13 -2.56 23.16 -107.50 -2.49 -5.05 14 16 C -0.09 -1.38 7.29 36.96 0.27 -1.11 14 17 C -0.05 -0.76 6.30 -28.43 -0.18 -0.94 14 18 H 0.28 6.45 8.29 -40.82 -0.34 6.11 14 19 H 0.13 2.67 8.06 -52.48 -0.42 2.25 14 20 H 0.09 1.18 8.14 -51.93 -0.42 0.76 14 21 H 0.09 1.18 8.14 -51.93 -0.42 0.76 14 22 H 0.07 1.00 8.14 -51.93 -0.42 0.58 14 23 H 0.07 1.00 8.14 -51.93 -0.42 0.58 14 LS Contribution 221.29 15.07 3.33 3.33 Total: -1.00 -30.50 221.29 -7.90 -38.40 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -1.66 Total: -1.07 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.48 Total: -0.82 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.42 Total: -48.04 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.02 Total: 13.24 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -2.49 Total: -5.05 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -30.50 -7.90 -38.40 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259777985.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.694 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds