Wall clock time and date at job start Mon Mar 30 2020 02:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86801 * 119.99956 * 2 1 4 4 H 1.48495 * 109.47235 * 240.00041 * 3 2 1 5 5 H 1.48507 * 109.46991 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46904 * 119.99635 * 3 2 1 7 7 C 1.40045 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.41572 * 120.00423 * 359.97438 * 7 2 1 10 10 N 1.33446 * 119.57351 * 0.02562 * 9 7 2 11 11 C 1.31555 * 121.09924 * 179.97438 * 10 9 7 12 12 C 1.40125 * 120.09574 * 0.02562 * 11 10 9 13 13 C 1.39137 * 117.18710 * 359.97438 * 12 11 10 14 14 N 1.33033 * 119.95042 * 0.02562 * 13 12 11 15 15 S 1.76566 * 110.05593 * 179.97438 * 13 12 11 16 16 C 1.81550 * 97.01085 * 359.97438 * 15 13 12 17 17 C 1.49974 * 127.35014 * 179.97438 * 12 11 10 18 18 H 0.97007 * 120.00271 * 359.97438 * 1 2 3 19 19 H 1.08005 * 119.94987 * 180.27678 * 11 10 9 20 20 H 1.09007 * 110.31142 * 241.08751 * 16 15 13 21 21 H 1.08997 * 110.31585 * 118.91443 * 16 15 13 22 22 H 1.08999 * 108.91789 * 300.77872 * 17 12 11 23 23 H 1.09001 * 108.91529 * 59.40566 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0946 1.6964 -1.2125 5 1 1.2758 2.7465 0.0006 6 1 3.0946 1.6964 1.2126 7 6 2.0071 -1.2128 -0.0005 8 1 3.0872 -1.2128 -0.0001 9 6 1.2993 -2.4389 -0.0005 10 7 -0.0351 -2.4290 -0.0005 11 6 -0.7230 -3.5505 -0.0010 12 6 -0.0569 -4.7833 -0.0011 13 6 1.3342 -4.7543 -0.0011 14 7 1.9742 -3.5880 -0.0006 15 16 1.9741 -6.3999 -0.0003 16 6 0.3750 -7.2595 0.0009 17 6 -0.6733 -6.1505 -0.0010 18 1 -0.4851 0.8401 0.0004 19 1 -1.8026 -3.5208 -0.0056 20 1 0.2761 -7.8735 0.8961 21 1 0.2753 -7.8746 -0.8935 22 1 -1.2996 -6.2558 0.8848 23 1 -1.2970 -6.2569 -0.8886 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259777985.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:08 Heat of formation + Delta-G solvation = 17.280982 kcal Electronic energy + Delta-G solvation = -11055.700857 eV Core-core repulsion = 8993.846930 eV Total energy + Delta-G solvation = -2061.853927 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.94237 -36.49363 -35.05483 -33.71857 -31.15095 -28.12996 -25.41541 -24.41906 -22.59166 -20.07130 -18.26362 -17.85377 -16.60238 -16.29696 -15.71945 -15.13408 -14.80332 -14.44790 -13.82721 -13.48781 -13.15056 -12.97698 -12.74257 -12.61739 -11.99517 -11.73713 -11.31569 -11.18777 -11.14346 -10.14474 -9.35345 -8.55350 -8.53470 -6.82966 0.51959 0.55738 0.78960 1.38195 1.39573 1.50256 1.52821 2.17605 2.63913 3.71361 3.81731 3.97263 4.14060 4.16574 4.25477 4.60576 4.79464 4.92264 4.99973 5.09847 5.14637 5.64298 6.04850 6.37235 6.50582 6.97656 8.07187 8.27890 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.071569 B = 0.009051 C = 0.008082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.137441 B = 3092.824661 C = 3463.496587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.024 3.976 3 Si 1.004 2.996 4 H -0.258 1.258 5 H -0.257 1.257 6 H -0.258 1.258 7 C -0.432 4.432 8 H 0.089 0.911 9 C 0.372 3.628 10 N -0.536 5.536 11 C 0.170 3.830 12 C -0.357 4.357 13 C 0.163 3.837 14 N -0.615 5.615 15 S -0.137 6.137 16 C -0.078 4.078 17 C -0.047 4.047 18 H 0.289 0.711 19 H 0.164 0.836 20 H 0.128 0.872 21 H 0.128 0.872 22 H 0.092 0.908 23 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.154 -6.867 -0.003 7.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.200 4.200 3 Si 0.822 3.178 4 H -0.182 1.182 5 H -0.180 1.180 6 H -0.182 1.182 7 C -0.467 4.467 8 H 0.107 0.893 9 C 0.133 3.867 10 N -0.253 5.253 11 C -0.007 4.007 12 C -0.373 4.373 13 C -0.097 4.097 14 N -0.338 5.338 15 S 0.099 5.901 16 C -0.226 4.226 17 C -0.086 4.086 18 H 0.100 0.900 19 H 0.181 0.819 20 H 0.146 0.854 21 H 0.146 0.854 22 H 0.111 0.889 23 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.635 -6.325 -0.003 6.532 hybrid contribution -1.214 0.516 0.001 1.319 sum -2.849 -5.809 -0.002 6.470 Atomic orbital electron populations 1.70151 1.08902 1.30275 1.27093 1.27095 0.96020 1.04613 0.92231 0.84947 0.78513 0.74078 0.80252 1.18204 1.18044 1.18215 1.19673 0.94969 0.88658 1.43441 0.89310 1.20328 0.86442 0.90736 0.89185 1.69090 1.08485 1.27935 1.19799 1.23281 1.00642 0.86909 0.89835 1.21944 0.94203 0.98388 1.22777 1.23472 0.93491 0.97518 0.95224 1.68308 1.41008 0.97566 1.26965 1.85167 1.16525 0.95794 1.92617 1.23996 0.90440 0.99245 1.08915 1.19825 0.97571 0.86688 1.04486 0.90022 0.81879 0.85352 0.85358 0.88948 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.39 11.45 21.84 0.25 -39.14 14 2 C 0.02 1.26 5.50 85.30 0.47 1.73 14 3 Si 1.00 37.99 29.56 68.60 2.03 40.02 14 4 H -0.26 -9.51 7.11 99.48 0.71 -8.80 14 5 H -0.26 -8.86 7.11 99.48 0.71 -8.15 14 6 H -0.26 -9.51 7.11 99.48 0.71 -8.81 14 7 C -0.43 -25.00 9.38 23.53 0.22 -24.78 14 8 H 0.09 4.99 7.85 -2.91 -0.02 4.97 14 9 C 0.37 22.45 7.38 135.21 1.00 23.45 14 10 N -0.54 -30.67 7.87 -193.44 -1.52 -32.19 14 11 C 0.17 8.12 11.26 85.19 0.96 9.08 14 12 C -0.36 -15.58 6.06 -19.42 -0.12 -15.70 14 13 C 0.16 8.13 7.61 84.73 0.64 8.78 14 14 N -0.61 -35.90 10.40 -190.45 -1.98 -37.88 14 15 S -0.14 -5.15 23.16 -56.49 -1.31 -6.46 14 16 C -0.08 -1.93 7.29 71.85 0.52 -1.41 14 17 C -0.05 -1.36 6.30 29.49 0.19 -1.18 14 18 H 0.29 13.52 8.29 -92.70 -0.77 12.75 14 19 H 0.16 6.44 8.06 -2.91 -0.02 6.41 14 20 H 0.13 2.43 8.14 -2.38 -0.02 2.41 14 21 H 0.13 2.43 8.14 -2.39 -0.02 2.41 14 22 H 0.09 2.30 8.14 -2.39 -0.02 2.28 14 23 H 0.09 2.29 8.14 -2.39 -0.02 2.28 14 Total: -1.00 -70.50 221.29 2.58 -67.93 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 1.23 Total: 7.75 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 3.88 Total: -0.03 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -3.25 Total: -109.21 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Atomic # 16 Polarization: -5.15 SS G_CDS: -1.31 Total: -6.46 kcal Total: -70.50 2.58 -67.93 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259777985.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.206 kcal (2) G-P(sol) polarization free energy of solvation -70.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds