Wall clock time and date at job start Mon Mar 30 2020 02:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 C 1.50701 * 109.46837 * 179.97438 * 9 7 2 11 11 N 1.33764 * 126.08952 * 90.02473 * 10 9 7 12 12 C 1.30379 * 109.49056 * 179.97438 * 11 10 9 13 13 N 1.37546 * 108.86589 * 0.02562 * 12 11 10 14 14 C 1.37642 * 140.04384 * 179.97438 * 13 12 11 15 15 C 1.30866 * 116.39874 * 180.02562 * 14 13 12 16 16 S 1.75792 * 109.97718 * 0.02562 * 15 14 13 17 17 C 1.36068 * 106.39015 * 359.77458 * 13 12 11 18 18 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 19 19 H 1.08992 * 109.47047 * 299.99662 * 9 7 2 20 20 H 1.09005 * 109.47370 * 60.00470 * 9 7 2 21 21 H 1.08000 * 125.56612 * 180.02562 * 12 11 10 22 22 H 1.08008 * 121.80567 * 0.04906 * 14 13 12 23 23 H 1.08003 * 125.01088 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 6 4.0137 -2.6150 0.0182 11 7 4.2812 -3.3609 -1.0595 12 6 4.6964 -4.5377 -0.6819 13 7 4.7080 -4.5853 0.6927 14 6 5.0115 -5.4547 1.7158 15 6 4.8463 -5.0018 2.9324 16 16 4.2595 -3.3455 2.8822 17 6 4.2806 -3.3672 1.1227 18 1 -0.4849 0.8401 -0.0004 19 1 3.8785 -0.6826 -0.8776 20 1 3.8711 -0.6783 0.9024 21 1 4.9842 -5.3435 -1.3408 22 1 5.3672 -6.4565 1.5248 23 1 5.0416 -5.5630 3.8343 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259780452.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:34 Heat of formation + Delta-G solvation = 71.417864 kcal Electronic energy + Delta-G solvation = -11002.616822 eV Core-core repulsion = 8943.110446 eV Total energy + Delta-G solvation = -2059.506376 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.49632 -37.63024 -35.24408 -32.71640 -31.09706 -29.17207 -25.33457 -23.87204 -22.03947 -21.45960 -19.02632 -18.89597 -16.83409 -16.60255 -16.16351 -15.86824 -15.16070 -14.88514 -14.18449 -14.00970 -13.58003 -13.07033 -12.52817 -12.39238 -12.01330 -11.93683 -11.67677 -11.19582 -10.84235 -10.79132 -10.27670 -8.31462 -8.15701 -6.35608 0.14133 0.33249 0.97205 1.30903 1.35900 1.38258 1.50341 1.84697 2.12000 2.35406 3.02464 3.69946 3.72240 4.10781 4.41828 4.51215 4.67011 4.91115 5.06042 5.32065 5.41632 5.57138 6.22746 6.33007 6.66423 6.97359 7.26479 8.86483 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.044909 B = 0.010165 C = 0.009258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.328267 B = 2753.943945 C = 3023.672121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.246 1.246 7 C -0.515 4.515 8 H 0.018 0.982 9 C 0.068 3.932 10 C 0.050 3.950 11 N -0.497 5.497 12 C 0.195 3.805 13 N -0.418 5.418 14 C 0.039 3.961 15 C -0.205 4.205 16 S 0.096 5.904 17 C -0.117 4.117 18 H 0.269 0.731 19 H 0.029 0.971 20 H 0.033 0.967 21 H 0.263 0.737 22 H 0.231 0.769 23 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.676 -11.486 6.493 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.188 4.188 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.170 1.170 7 C -0.553 4.553 8 H 0.037 0.963 9 C 0.029 3.971 10 C -0.087 4.087 11 N -0.213 5.213 12 C -0.087 4.087 13 N -0.099 5.099 14 C -0.087 4.087 15 C -0.341 4.341 16 S 0.352 5.648 17 C -0.340 4.340 18 H 0.078 0.922 19 H 0.047 0.953 20 H 0.051 0.949 21 H 0.278 0.722 22 H 0.247 0.753 23 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 13.132 -10.280 6.717 17.979 hybrid contribution 0.024 -0.437 -0.501 0.665 sum 13.156 -10.717 6.216 18.071 Atomic orbital electron populations 1.70055 1.08220 1.28357 1.52159 1.25964 0.95714 1.03334 0.93746 0.85637 0.79519 0.77933 0.79505 1.18966 1.20016 1.16997 1.20998 0.90457 0.92808 1.51086 0.96315 1.17881 0.94275 0.87768 0.97132 1.20382 1.03968 0.98217 0.86145 1.69929 1.17005 1.03861 1.30482 1.26208 1.05159 0.98253 0.79060 1.44488 1.47055 1.10111 1.08249 1.21180 1.04326 0.98383 0.84851 1.25595 1.08308 0.98046 1.02198 1.84682 1.73921 1.13578 0.92641 1.24261 1.16527 0.92919 1.00306 0.92203 0.95318 0.94862 0.72161 0.75269 0.75050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.84 13.96 21.45 0.30 -61.54 14 2 C 0.01 0.58 5.47 84.66 0.46 1.04 14 3 Si 0.95 46.23 27.47 68.60 1.88 48.11 14 4 H -0.26 -12.38 7.11 99.48 0.71 -11.67 14 5 H -0.27 -12.75 7.11 99.48 0.71 -12.04 14 6 H -0.25 -11.17 6.54 99.48 0.65 -10.52 14 7 C -0.52 -32.50 9.65 25.60 0.25 -32.25 14 8 H 0.02 1.32 7.98 -2.91 -0.02 1.30 14 9 C 0.07 3.66 4.59 29.10 0.13 3.79 14 10 C 0.05 2.45 6.33 41.81 0.26 2.71 14 11 N -0.50 -22.22 11.21 -185.60 -2.08 -24.31 14 12 C 0.20 6.32 13.08 179.48 2.35 8.67 14 13 N -0.42 -13.25 3.19 -356.20 -1.14 -14.39 14 14 C 0.04 0.79 11.26 83.88 0.94 1.74 14 15 C -0.20 -4.06 11.10 67.92 0.75 -3.31 14 16 S 0.10 3.12 23.36 -56.49 -1.32 1.80 14 17 C -0.12 -4.82 7.75 83.58 0.65 -4.18 14 18 H 0.27 16.18 8.31 -92.71 -0.77 15.41 14 19 H 0.03 1.53 7.57 -2.39 -0.02 1.51 14 20 H 0.03 1.73 7.20 -2.38 -0.02 1.71 14 21 H 0.26 5.02 8.06 -2.91 -0.02 4.99 14 22 H 0.23 2.03 8.06 -2.91 -0.02 2.01 14 23 H 0.23 2.20 8.06 -2.91 -0.02 2.18 14 Total: -1.00 -81.84 224.41 4.61 -77.23 By element: Atomic # 1 Polarization: -6.29 SS G_CDS: 1.17 Total: -5.12 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 5.80 Total: -21.78 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -2.92 Total: -100.24 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.88 Total: 48.11 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.32 Total: 1.80 kcal Total: -81.84 4.61 -77.23 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259780452.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.646 kcal (2) G-P(sol) polarization free energy of solvation -81.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds