Wall clock time and date at job start Mon Mar 30 2020 02:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40376 * 126.11352 * 2 1 4 4 C 1.31143 * 108.29347 * 180.02562 * 3 2 1 5 5 C 1.39101 * 108.06377 * 0.02562 * 4 3 2 6 6 C 1.34049 * 126.11358 * 179.97438 * 2 1 3 7 7 C 1.50880 * 128.92693 * 359.69253 * 6 2 1 8 8 C 1.53513 * 107.82895 * 195.95286 * 7 6 2 9 9 N 1.46991 * 109.62543 * 310.78187 * 8 7 6 10 10 C 1.47294 * 111.45324 * 71.60889 * 9 8 7 11 11 H 1.09001 * 109.74072 * 68.35258 * 10 9 8 12 12 C 1.50702 * 109.70375 * 188.94794 * 10 9 8 13 13 H 1.08002 * 120.00299 * 118.80636 * 12 10 9 14 14 C 1.37884 * 119.99942 * 298.52194 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 H 1.09000 * 109.46413 * 90.03214 * 1 2 3 21 21 H 1.09002 * 109.46928 * 210.02543 * 1 2 3 22 22 H 1.08994 * 109.47318 * 330.02886 * 1 2 3 23 23 H 1.07998 * 125.97422 * 179.97438 * 4 3 2 24 24 H 1.09004 * 109.78385 * 315.54121 * 7 6 2 25 25 H 1.09003 * 109.78897 * 76.36694 * 7 6 2 26 26 H 1.08998 * 109.43985 * 70.86693 * 8 7 6 27 27 H 1.09001 * 109.43939 * 190.78731 * 8 7 6 28 28 H 1.00900 * 111.03370 * 307.29890 * 9 8 7 29 29 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2924 1.1340 0.0000 4 6 3.5409 0.7327 -0.0006 5 6 3.5468 -0.6583 -0.0015 6 6 2.2551 -1.0829 0.0005 7 6 1.8656 -2.5406 0.0074 8 6 3.1035 -3.3559 0.4067 9 7 4.2554 -2.9329 -0.4026 10 6 4.7286 -1.5950 -0.0081 11 1 5.1673 -1.6387 0.9887 12 6 5.7581 -1.1086 -0.9954 13 1 5.5773 -0.2091 -1.5652 14 6 6.9334 -1.8088 -1.1671 15 7 7.1536 -2.9041 -0.4732 16 14 8.2128 -1.2018 -2.3852 17 1 9.1527 -0.2801 -1.6979 18 1 8.9654 -2.3598 -2.9309 19 1 7.5375 -0.4827 -3.4953 20 1 -0.3632 -0.0006 -1.0277 21 1 -0.3633 -0.8898 0.5142 22 1 -0.3634 0.8902 0.5134 23 1 4.4123 1.3706 -0.0011 24 1 1.0662 -2.7054 0.7299 25 1 1.5325 -2.8383 -0.9868 26 1 3.3210 -3.1920 1.4621 27 1 2.9107 -4.4151 0.2363 28 1 4.0370 -2.9635 -1.3872 29 1 7.9803 -3.3969 -0.5942 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259780640.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:17 Heat of formation + Delta-G solvation = 82.926731 kcal Electronic energy + Delta-G solvation = -13628.760156 eV Core-core repulsion = 11360.551728 eV Total energy + Delta-G solvation = -2268.208428 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.74628 -36.17985 -33.32547 -32.29811 -29.67260 -28.91975 -26.29990 -25.06854 -22.07087 -21.72638 -20.02893 -18.26639 -16.56571 -15.85448 -15.08382 -14.43466 -14.11400 -13.70765 -13.32767 -12.95031 -12.65656 -12.45507 -12.20517 -11.92309 -11.35077 -11.28000 -10.81457 -10.60147 -10.29031 -10.03773 -9.70540 -9.09330 -8.60683 -8.42146 -7.32880 -6.94325 -5.85112 -3.98559 2.49336 3.07462 3.37066 3.44225 3.47332 3.67841 4.52397 4.91712 5.16253 5.26285 5.31425 5.49401 5.53292 5.65021 5.77659 5.93293 6.03786 6.37910 6.51688 6.57971 6.67270 6.95622 7.46709 7.56088 7.70080 7.96072 8.22715 8.41248 8.63580 8.97627 9.13796 9.69727 11.18989 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.043225 B = 0.010813 C = 0.009114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.622317 B = 2588.945496 C = 3071.582674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.381 5.381 3 N -0.325 5.325 4 C 0.065 3.935 5 C -0.221 4.221 6 C 0.048 3.952 7 C -0.087 4.087 8 C 0.062 3.938 9 N -0.650 5.650 10 C 0.287 3.713 11 H 0.048 0.952 12 C -0.529 4.529 13 H 0.057 0.943 14 C 0.081 3.919 15 N -0.851 5.851 16 Si 0.884 3.116 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.276 1.276 20 H 0.064 0.936 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.180 0.820 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.327 0.673 29 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.487 0.845 1.045 10.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.164 5.164 3 N -0.148 5.148 4 C -0.119 4.119 5 C -0.234 4.234 6 C -0.079 4.079 7 C -0.128 4.128 8 C -0.070 4.070 9 N -0.277 5.277 10 C 0.179 3.821 11 H 0.065 0.935 12 C -0.568 4.568 13 H 0.075 0.925 14 C -0.126 4.126 15 N -0.486 5.486 16 Si 0.712 3.288 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.201 1.201 20 H 0.083 0.917 21 H 0.096 0.904 22 H 0.099 0.901 23 H 0.197 0.803 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.145 0.855 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.808 1.350 1.486 10.993 hybrid contribution 0.350 0.271 -1.099 1.185 sum -10.458 1.620 0.387 10.590 Atomic orbital electron populations 1.21608 0.75993 1.03415 1.02375 1.48015 1.05522 1.03888 1.58952 1.77408 1.02026 1.07414 1.27919 1.23514 0.94207 0.95483 0.98705 1.21706 0.95945 0.95221 1.10534 1.20890 0.91538 0.90379 1.05121 1.21188 1.01202 0.88964 1.01490 1.22103 0.88315 0.97151 0.99449 1.61072 1.29576 1.30286 1.06773 1.17763 0.86507 0.80369 0.97440 0.93451 1.20961 1.00984 1.10460 1.24353 0.92523 1.24989 0.97587 0.94601 0.95393 1.70105 1.24242 1.15158 1.39069 0.86752 0.81937 0.78292 0.81838 1.20750 1.21358 1.20059 0.91722 0.90384 0.90079 0.80312 0.91717 0.91063 0.91850 0.91696 0.85513 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.37 11.34 59.85 0.68 2.05 15 2 N -0.38 -7.03 4.00 -63.87 -0.26 -7.28 15 3 N -0.33 -6.75 12.60 30.52 0.38 -6.36 15 4 C 0.07 1.41 11.37 -17.53 -0.20 1.21 15 5 C -0.22 -5.00 5.48 -105.07 -0.58 -5.57 15 6 C 0.05 0.94 6.79 -82.35 -0.56 0.38 15 7 C -0.09 -1.42 6.06 -27.53 -0.17 -1.58 15 8 C 0.06 1.14 6.54 -3.51 -0.02 1.12 15 9 N -0.65 -15.07 6.00 -108.49 -0.65 -15.72 15 10 C 0.29 7.20 2.68 -69.75 -0.19 7.02 15 11 H 0.05 1.33 8.14 -51.93 -0.42 0.90 15 12 C -0.53 -14.30 8.41 -34.44 -0.29 -14.59 15 13 H 0.06 1.54 7.43 -52.49 -0.39 1.15 15 14 C 0.08 2.21 5.40 -17.82 -0.10 2.11 15 15 N -0.85 -24.25 12.84 55.43 0.71 -23.54 15 16 Si 0.88 21.03 29.54 -169.99 -5.02 16.01 15 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 15 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.08 0.80 7.70 -51.93 -0.40 0.40 15 22 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.18 3.58 8.06 -52.49 -0.42 3.16 15 24 H 0.06 0.88 7.88 -51.93 -0.41 0.47 15 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 26 H 0.06 1.21 8.07 -51.93 -0.42 0.80 15 27 H 0.06 1.07 8.14 -51.93 -0.42 0.64 15 28 H 0.33 7.63 8.57 -39.29 -0.34 7.29 15 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 15 LS Contribution 247.10 15.07 3.72 3.72 Total: -1.00 -30.78 247.10 -6.15 -36.93 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -3.63 Total: 4.11 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -1.42 Total: -7.87 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.19 Total: -52.90 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.78 -6.15 -36.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259780640.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.861 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds