Wall clock time and date at job start Mon Mar 30 2020 02:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40376 * 126.11352 * 2 1 4 4 C 1.31143 * 108.29347 * 180.02562 * 3 2 1 5 5 C 1.39101 * 108.06377 * 0.02562 * 4 3 2 6 6 C 1.34049 * 126.11358 * 179.97438 * 2 1 3 7 7 C 1.50880 * 128.92693 * 359.69253 * 6 2 1 8 8 C 1.53513 * 107.82895 * 195.95286 * 7 6 2 9 9 N 1.46991 * 109.62543 * 310.78187 * 8 7 6 10 10 C 1.47294 * 111.45324 * 71.60889 * 9 8 7 11 11 H 1.09001 * 109.74072 * 68.35258 * 10 9 8 12 12 C 1.50702 * 109.70375 * 188.94794 * 10 9 8 13 13 H 1.08002 * 120.00299 * 118.80636 * 12 10 9 14 14 C 1.37884 * 119.99942 * 298.52194 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 H 1.09000 * 109.46413 * 90.03214 * 1 2 3 21 21 H 1.09002 * 109.46928 * 210.02543 * 1 2 3 22 22 H 1.08994 * 109.47318 * 330.02886 * 1 2 3 23 23 H 1.07998 * 125.97422 * 179.97438 * 4 3 2 24 24 H 1.09004 * 109.78385 * 315.54121 * 7 6 2 25 25 H 1.09003 * 109.78897 * 76.36694 * 7 6 2 26 26 H 1.08998 * 109.43985 * 70.86693 * 8 7 6 27 27 H 1.09001 * 109.43939 * 190.78731 * 8 7 6 28 28 H 1.00900 * 111.03370 * 307.29890 * 9 8 7 29 29 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2924 1.1340 0.0000 4 6 3.5409 0.7327 -0.0006 5 6 3.5468 -0.6583 -0.0015 6 6 2.2551 -1.0829 0.0005 7 6 1.8656 -2.5406 0.0074 8 6 3.1035 -3.3559 0.4067 9 7 4.2554 -2.9329 -0.4026 10 6 4.7286 -1.5950 -0.0081 11 1 5.1673 -1.6387 0.9887 12 6 5.7581 -1.1086 -0.9954 13 1 5.5773 -0.2091 -1.5652 14 6 6.9334 -1.8088 -1.1671 15 7 7.1536 -2.9041 -0.4732 16 14 8.2128 -1.2018 -2.3852 17 1 9.1527 -0.2801 -1.6979 18 1 8.9654 -2.3598 -2.9309 19 1 7.5375 -0.4827 -3.4953 20 1 -0.3632 -0.0006 -1.0277 21 1 -0.3633 -0.8898 0.5142 22 1 -0.3634 0.8902 0.5134 23 1 4.4123 1.3706 -0.0011 24 1 1.0662 -2.7054 0.7299 25 1 1.5325 -2.8383 -0.9868 26 1 3.3210 -3.1920 1.4621 27 1 2.9107 -4.4151 0.2363 28 1 4.0370 -2.9635 -1.3872 29 1 7.9803 -3.3969 -0.5942 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259780640.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:16 Heat of formation + Delta-G solvation = 60.638678 kcal Electronic energy + Delta-G solvation = -13629.726639 eV Core-core repulsion = 11360.551728 eV Total energy + Delta-G solvation = -2269.174911 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.29259 -37.84101 -34.95031 -34.06171 -31.28290 -30.57990 -27.67373 -26.89810 -23.73215 -23.40216 -21.58754 -19.84075 -18.45307 -17.46018 -16.48368 -16.34558 -15.67927 -15.28850 -14.89599 -14.39174 -14.25563 -13.87366 -13.66460 -13.34535 -13.05668 -12.87886 -12.64893 -12.41653 -11.86500 -11.85310 -11.46142 -11.03322 -10.51037 -10.07468 -8.98604 -8.66672 -7.92755 -6.12837 0.96688 1.47431 1.48837 1.58116 1.75027 1.99211 2.53031 3.27905 3.71634 3.79316 4.02492 4.18232 4.37823 4.44216 4.47589 4.57328 4.67010 4.92130 4.98914 5.05453 5.17963 5.27325 5.60069 5.81041 5.86079 6.20764 6.35054 6.67546 6.87172 7.12330 7.17980 7.58812 9.10351 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.043225 B = 0.010813 C = 0.009114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.622317 B = 2588.945496 C = 3071.582674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.372 5.372 3 N -0.339 5.339 4 C 0.048 3.952 5 C -0.266 4.266 6 C 0.061 3.939 7 C -0.076 4.076 8 C 0.061 3.939 9 N -0.670 5.670 10 C 0.297 3.703 11 H 0.002 0.998 12 C -0.541 4.541 13 H 0.047 0.953 14 C 0.036 3.964 15 N -0.882 5.882 16 Si 0.948 3.052 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.274 1.274 20 H 0.084 0.916 21 H 0.110 0.890 22 H 0.094 0.906 23 H 0.179 0.821 24 H 0.106 0.894 25 H 0.093 0.907 26 H 0.050 0.950 27 H 0.092 0.908 28 H 0.325 0.675 29 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.640 0.448 0.489 12.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.154 5.154 3 N -0.162 5.162 4 C -0.135 4.135 5 C -0.279 4.279 6 C -0.068 4.068 7 C -0.116 4.116 8 C -0.070 4.070 9 N -0.297 5.297 10 C 0.188 3.812 11 H 0.020 0.980 12 C -0.579 4.579 13 H 0.066 0.934 14 C -0.167 4.167 15 N -0.518 5.518 16 Si 0.774 3.226 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.199 1.199 20 H 0.102 0.898 21 H 0.129 0.871 22 H 0.112 0.888 23 H 0.196 0.804 24 H 0.124 0.876 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.142 0.858 29 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.996 0.976 0.934 13.066 hybrid contribution 0.883 0.390 -0.878 1.305 sum -12.113 1.366 0.056 12.189 Atomic orbital electron populations 1.22142 0.72270 1.05777 1.04384 1.48451 1.07493 1.02774 1.56719 1.77336 1.01757 1.08693 1.28442 1.23563 0.94899 0.95475 0.99587 1.21532 0.96688 0.95360 1.14339 1.21297 0.90759 0.92203 1.02562 1.21192 1.00864 0.85779 1.03812 1.22157 0.87977 0.98970 0.97922 1.60809 1.32548 1.29330 1.07005 1.17279 0.87344 0.82177 0.94392 0.98047 1.21222 1.02125 1.10152 1.24429 0.93427 1.25655 0.99343 0.94744 0.96991 1.70225 1.24765 1.16291 1.40544 0.85751 0.79464 0.77749 0.79651 1.20373 1.20974 1.19882 0.89800 0.87125 0.88774 0.80445 0.87616 0.88902 0.93148 0.89026 0.85825 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.95 11.34 127.77 1.45 3.40 15 2 N -0.37 -12.73 4.00 -355.98 -1.42 -14.16 15 3 N -0.34 -13.76 12.60 -57.37 -0.72 -14.48 15 4 C 0.05 2.10 11.37 85.00 0.97 3.07 15 5 C -0.27 -12.14 5.48 -20.15 -0.11 -12.25 15 6 C 0.06 2.29 6.79 41.75 0.28 2.57 15 7 C -0.08 -2.17 6.06 30.08 0.18 -1.99 15 8 C 0.06 2.14 6.54 86.46 0.57 2.71 15 9 N -0.67 -31.23 6.00 -497.15 -2.98 -34.21 15 10 C 0.30 15.39 2.68 43.38 0.12 15.51 15 11 H 0.00 0.11 8.14 -2.39 -0.02 0.09 15 12 C -0.54 -30.15 8.41 25.60 0.22 -29.94 15 13 H 0.05 2.67 7.43 -2.91 -0.02 2.65 15 14 C 0.04 2.01 5.40 84.66 0.46 2.47 15 15 N -0.88 -51.46 12.84 21.45 0.28 -51.18 15 16 Si 0.95 43.96 29.54 68.60 2.03 45.99 15 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 18 H -0.28 -12.92 7.11 99.48 0.71 -12.22 15 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 15 20 H 0.08 1.50 8.14 -2.39 -0.02 1.48 15 21 H 0.11 1.62 7.70 -2.39 -0.02 1.61 15 22 H 0.09 1.75 8.14 -2.39 -0.02 1.74 15 23 H 0.18 7.48 8.06 -2.91 -0.02 7.46 15 24 H 0.11 2.26 7.88 -2.38 -0.02 2.24 15 25 H 0.09 2.37 8.14 -2.39 -0.02 2.35 15 26 H 0.05 1.89 8.07 -2.39 -0.02 1.87 15 27 H 0.09 2.75 8.14 -2.39 -0.02 2.73 15 28 H 0.32 15.13 8.57 -89.69 -0.77 14.36 15 29 H 0.26 14.25 8.31 -92.70 -0.77 13.48 15 Total: -1.00 -68.09 247.10 1.68 -66.41 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.38 Total: 16.09 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 4.13 Total: -14.46 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -4.85 Total: -114.03 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -68.09 1.68 -66.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259780640.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.046 kcal (2) G-P(sol) polarization free energy of solvation -68.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds