Wall clock time and date at job start Mon Mar 30 2020 02:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30185 * 125.40976 * 2 1 4 4 C 1.34197 * 109.53285 * 179.97438 * 3 2 1 5 5 C 1.34672 * 107.78430 * 359.97438 * 4 3 2 6 6 S 1.77026 * 146.20525 * 180.02562 * 5 4 3 7 7 C 1.77804 * 95.74949 * 179.97438 * 6 5 4 8 8 C 1.40313 * 128.02832 * 180.02562 * 7 6 5 9 9 H 1.08008 * 119.99911 * 173.81334 * 8 7 6 10 10 C 1.39833 * 120.00168 * 353.80992 * 8 7 6 11 11 N 1.30969 * 120.00116 * 6.29319 * 10 8 7 12 12 Si 1.86799 * 119.99812 * 186.28719 * 10 8 7 13 13 H 1.48504 * 109.47154 * 94.99061 * 12 10 8 14 14 H 1.48498 * 109.47008 * 214.98668 * 12 10 8 15 15 H 1.48503 * 109.47612 * 334.98713 * 12 10 8 16 16 C 1.37775 * 103.93583 * 0.20349 * 7 6 5 17 17 N 1.36396 * 118.49745 * 359.61680 * 16 7 6 18 18 H 1.09004 * 109.47443 * 270.04609 * 1 2 3 19 19 H 1.09006 * 109.46853 * 30.04779 * 1 2 3 20 20 H 1.08999 * 109.47333 * 150.04777 * 1 2 3 21 21 H 1.08004 * 126.10883 * 180.02562 * 4 3 2 22 22 H 0.97001 * 120.00420 * 179.97438 * 11 10 8 23 23 H 1.08005 * 120.74996 * 179.74351 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2612 1.0610 0.0000 4 6 3.5520 0.6939 0.0006 5 6 3.5968 -0.6521 0.0015 6 16 4.6299 -2.0896 0.0032 7 6 3.2972 -3.2667 0.0039 8 6 3.3810 -4.6673 0.0057 9 1 2.4849 -5.2617 0.1067 10 6 4.6246 -5.2935 -0.1233 11 7 5.7215 -4.5779 -0.1219 12 14 4.7214 -7.1508 -0.2975 13 1 4.7880 -7.5102 -1.7369 14 1 5.9370 -7.6502 0.3940 15 1 3.5163 -7.7688 0.3117 16 6 2.1633 -2.4841 -0.0020 17 7 2.3086 -1.1279 0.0015 18 1 -0.3634 0.0008 1.0277 19 1 -0.3633 0.8896 -0.5146 20 1 -0.3634 -0.8904 -0.5131 21 1 4.4029 1.3591 0.0011 22 1 6.5842 -5.0123 -0.2110 23 1 1.1816 -2.9343 -0.0072 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259804197.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:39 Heat of formation + Delta-G solvation = 45.666670 kcal Electronic energy + Delta-G solvation = -11020.725070 eV Core-core repulsion = 8960.102039 eV Total energy + Delta-G solvation = -2060.623031 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.84664 -37.03160 -35.56705 -32.42060 -31.57974 -27.70514 -27.26354 -23.78620 -22.33366 -20.33956 -19.32559 -18.08798 -17.06037 -16.56164 -16.17813 -15.12850 -15.00186 -14.03837 -13.90284 -13.78344 -13.43056 -13.26864 -13.17612 -12.57703 -12.35601 -12.02689 -11.44766 -11.18565 -11.13133 -10.45185 -9.87788 -9.02270 -8.01593 -6.68211 0.57672 0.76347 1.36231 1.38519 1.57586 1.69378 1.75407 2.09147 2.18758 2.37225 2.88837 3.74161 4.12625 4.35325 4.70054 4.75006 4.86479 4.89162 4.95861 5.16950 5.59785 5.76826 5.92240 6.11115 6.40079 6.83169 7.15946 7.93721 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.064490 B = 0.009832 C = 0.008578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.074546 B = 2847.128216 C = 3263.282566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C 0.126 3.874 3 N -0.491 5.491 4 C -0.035 4.035 5 C -0.150 4.150 6 S 0.099 5.901 7 C 0.056 3.944 8 C -0.403 4.403 9 H 0.118 0.882 10 C 0.023 3.977 11 N -0.802 5.802 12 Si 1.019 2.981 13 H -0.258 1.258 14 H -0.262 1.262 15 H -0.248 1.248 16 C -0.296 4.296 17 N -0.350 5.350 18 H 0.082 0.918 19 H 0.098 0.902 20 H 0.072 0.928 21 H 0.186 0.814 22 H 0.312 0.688 23 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 -3.399 -0.282 3.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.133 4.133 3 N -0.210 5.210 4 C -0.193 4.193 5 C -0.379 4.379 6 S 0.349 5.651 7 C -0.064 4.064 8 C -0.436 4.436 9 H 0.136 0.864 10 C -0.197 4.197 11 N -0.428 5.428 12 Si 0.836 3.164 13 H -0.183 1.183 14 H -0.186 1.186 15 H -0.171 1.171 16 C -0.419 4.419 17 N -0.024 5.024 18 H 0.101 0.899 19 H 0.117 0.883 20 H 0.091 0.909 21 H 0.203 0.797 22 H 0.126 0.874 23 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.713 -2.828 -0.283 2.930 hybrid contribution -0.855 -0.974 -0.049 1.297 sum -1.568 -3.803 -0.332 4.126 Atomic orbital electron populations 1.20055 0.82639 1.03989 1.03583 1.24254 0.96752 0.79152 1.13152 1.69906 1.01961 1.27635 1.21482 1.21316 0.94852 0.89399 1.13764 1.26023 0.90495 1.01198 1.20151 1.85071 1.06857 0.89446 1.83678 1.21947 0.91019 0.96633 0.96842 1.19367 0.96482 0.88072 1.39670 0.86384 1.27293 0.93377 1.08259 0.90731 1.68980 1.00923 1.41324 1.31530 0.84594 0.79961 0.71969 0.79854 1.18283 1.18567 1.17107 1.20232 0.99830 0.79356 1.42522 1.43786 1.06668 1.05691 1.46221 0.89948 0.88349 0.90873 0.79718 0.87449 0.83377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.47 10.51 71.23 0.75 -0.72 14 2 C 0.13 5.78 8.14 137.12 1.12 6.90 14 3 N -0.49 -23.20 11.22 -185.83 -2.09 -25.29 14 4 C -0.04 -1.67 11.89 83.51 0.99 -0.67 14 5 C -0.15 -7.70 8.05 83.01 0.67 -7.03 14 6 S 0.10 5.01 20.48 -56.49 -1.16 3.85 14 7 C 0.06 2.89 6.37 22.67 0.14 3.03 14 8 C -0.40 -19.00 9.38 23.16 0.22 -18.79 14 9 H 0.12 5.08 7.85 -2.91 -0.02 5.06 14 10 C 0.02 0.98 5.49 85.21 0.47 1.45 14 11 N -0.80 -36.44 11.02 21.81 0.24 -36.20 14 12 Si 1.02 31.59 29.56 68.60 2.03 33.62 14 13 H -0.26 -7.82 7.11 99.48 0.71 -7.11 14 14 H -0.26 -7.71 7.11 99.48 0.71 -7.00 14 15 H -0.25 -7.34 7.11 99.48 0.71 -6.64 14 16 C -0.30 -15.09 11.26 83.87 0.94 -14.15 14 17 N -0.35 -17.83 3.14 -337.08 -1.06 -18.89 14 18 H 0.08 2.45 8.14 -2.38 -0.02 2.43 14 19 H 0.10 2.83 8.14 -2.38 -0.02 2.81 14 20 H 0.07 2.28 8.14 -2.39 -0.02 2.26 14 21 H 0.19 7.42 8.06 -2.91 -0.02 7.40 14 22 H 0.31 12.49 8.30 -92.71 -0.77 11.72 14 23 H 0.15 6.95 8.06 -2.91 -0.02 6.92 14 Total: -1.00 -59.54 224.52 4.49 -55.05 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 1.22 Total: 17.84 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: 5.30 Total: -29.98 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -2.90 Total: -80.37 kcal Atomic # 14 Polarization: 31.59 SS G_CDS: 2.03 Total: 33.62 kcal Atomic # 16 Polarization: 5.01 SS G_CDS: -1.16 Total: 3.85 kcal Total: -59.54 4.49 -55.05 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259804197.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.712 kcal (2) G-P(sol) polarization free energy of solvation -59.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds