Wall clock time and date at job start Mon Mar 30 2020 02:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46668 * 2 1 4 4 C 1.53001 * 109.47194 * 119.99429 * 2 1 3 5 5 C 1.53000 * 109.46886 * 175.00077 * 4 2 1 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 2 7 7 C 1.39304 * 126.47041 * 264.69205 * 6 5 4 8 8 C 1.35968 * 108.08650 * 179.89522 * 7 6 5 9 9 N 1.36169 * 109.05461 * 0.37148 * 8 7 6 10 10 H 0.96998 * 125.74427 * 179.80445 * 9 8 7 11 11 C 1.38017 * 108.51112 * 359.76805 * 9 8 7 12 12 C 1.39952 * 126.35821 * 180.02562 * 11 9 8 13 13 H 1.07989 * 120.00491 * 179.97438 * 12 11 9 14 14 C 1.40070 * 119.99437 * 359.97438 * 12 11 9 15 15 N 1.30861 * 120.00224 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00030 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46972 * 59.99288 * 16 14 12 18 18 H 1.48495 * 109.47325 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46705 * 299.99912 * 16 14 12 20 20 H 1.09004 * 109.47242 * 299.99746 * 1 2 3 21 21 H 1.09000 * 109.47237 * 60.00087 * 1 2 3 22 22 H 1.09002 * 109.46818 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47281 * 240.00284 * 2 1 3 24 24 H 1.09004 * 109.46932 * 299.99494 * 3 2 1 25 25 H 1.08994 * 109.47037 * 60.00135 * 3 2 1 26 26 H 1.09003 * 109.46480 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46652 * 55.00422 * 4 2 1 28 28 H 1.08992 * 109.47514 * 295.00511 * 4 2 1 29 29 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 30 30 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 31 31 H 1.07997 * 125.95653 * 0.02562 * 7 6 5 32 32 H 1.08008 * 125.47378 * 180.14597 * 8 7 6 33 33 H 0.97003 * 120.00309 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.8309 1.1880 6 6 4.0672 -1.5417 2.4182 7 6 4.5321 -0.9446 3.5877 8 6 4.8877 -1.9313 4.4530 9 7 4.6697 -3.1393 3.8636 10 1 4.8428 -4.0052 4.2651 11 6 4.1601 -2.9243 2.5991 12 6 3.8024 -3.9082 1.6703 13 1 3.4112 -3.6230 0.7050 14 6 3.9517 -5.2630 1.9930 15 7 4.4262 -5.6087 3.1626 16 14 3.4749 -6.5765 0.7532 17 1 4.2847 -6.4100 -0.4804 18 1 3.7278 -7.9199 1.3333 19 1 2.0337 -6.4435 0.4210 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.6766 1.9564 -0.8901 25 1 1.6766 1.9564 0.8899 26 1 3.1299 1.4426 -0.0005 27 1 1.6054 -1.7197 1.2952 28 1 1.7516 -0.1582 2.1370 29 1 3.8532 -1.3938 0.3003 30 1 3.9995 0.1677 1.1421 31 1 4.5968 0.1170 3.7753 32 1 5.2832 -1.7811 5.4468 33 1 4.5299 -6.5470 3.3859 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259808238.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:49 Heat of formation + Delta-G solvation = -4.043760 kcal Electronic energy + Delta-G solvation = -13455.266206 eV Core-core repulsion = 11286.826797 eV Total energy + Delta-G solvation = -2168.439408 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.93131 -36.21366 -33.36487 -31.28035 -28.48904 -27.49500 -26.78164 -24.37671 -22.32849 -19.35791 -19.33195 -18.13086 -16.93253 -15.26616 -14.71400 -14.47610 -13.66846 -13.30842 -12.65829 -12.53711 -12.23224 -12.00496 -11.91494 -11.41172 -11.24068 -11.12470 -11.03242 -10.83354 -10.49791 -10.31750 -10.09942 -9.98934 -9.64655 -9.37279 -9.29747 -7.00406 -6.80033 -6.74386 -4.12149 3.00209 3.08654 3.12783 3.96880 3.97749 4.40267 5.30059 5.38342 5.42072 5.46045 5.53612 5.91568 6.06985 6.13030 6.15650 6.35597 6.41186 6.47718 6.55698 6.69323 6.82736 6.87171 6.92793 7.13571 7.20324 7.31596 7.46561 7.68143 8.00120 8.18255 8.32530 8.84347 9.05633 9.29470 9.82917 10.28768 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.025706 B = 0.010571 C = 0.007910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.965495 B = 2648.145870 C = 3539.053409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 C -0.145 4.145 4 C -0.105 4.105 5 C -0.010 4.010 6 C -0.312 4.312 7 C -0.174 4.174 8 C -0.128 4.128 9 N -0.554 5.554 10 H 0.418 0.582 11 C 0.233 3.767 12 C -0.439 4.439 13 H 0.089 0.911 14 C 0.062 3.938 15 N -0.859 5.859 16 Si 0.924 3.076 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.266 1.266 20 H 0.050 0.950 21 H 0.045 0.955 22 H 0.052 0.948 23 H 0.064 0.936 24 H 0.042 0.958 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.772 4.778 -3.758 7.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.202 4.202 4 C -0.142 4.142 5 C -0.048 4.048 6 C -0.316 4.316 7 C -0.201 4.201 8 C -0.256 4.256 9 N -0.161 5.161 10 H 0.264 0.736 11 C 0.117 3.883 12 C -0.475 4.475 13 H 0.107 0.893 14 C -0.148 4.148 15 N -0.493 5.493 16 Si 0.750 3.250 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.191 1.191 20 H 0.069 0.931 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.141 0.859 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.670 4.464 -3.509 6.761 hybrid contribution -0.064 -0.989 -0.096 0.996 sum -3.734 3.475 -3.605 6.246 Atomic orbital electron populations 1.21836 0.96277 1.01368 1.00732 1.21204 0.94797 0.96161 0.99779 1.21859 1.01448 0.96338 1.00534 1.21655 0.97541 0.99734 0.95287 1.19431 0.92779 0.97121 0.95436 1.19200 1.22503 0.91964 0.97961 1.20049 1.08661 0.95684 0.95657 1.21183 1.18770 0.86183 0.99455 1.42797 1.51967 1.07674 1.13645 0.73634 1.17851 0.94187 0.92155 0.84133 1.18750 1.38490 0.89074 1.01150 0.89327 1.25885 0.93110 0.99999 0.95825 1.68836 1.39648 1.19511 1.21321 0.86079 0.79852 0.78525 0.80545 1.19114 1.20648 1.19100 0.93117 0.93625 0.92868 0.91715 0.93842 0.93155 0.92306 0.92069 0.93079 0.93680 0.94132 0.88511 0.85877 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.19 37.16 0.34 -1.64 16 2 C -0.10 -1.56 2.92 -90.62 -0.26 -1.83 16 3 C -0.14 -2.01 8.95 37.16 0.33 -1.68 16 4 C -0.10 -1.99 4.66 -26.73 -0.12 -2.12 16 5 C -0.01 -0.21 5.19 -27.88 -0.14 -0.35 16 6 C -0.31 -7.90 5.50 -103.66 -0.57 -8.47 16 7 C -0.17 -4.28 10.74 -40.00 -0.43 -4.71 16 8 C -0.13 -3.15 11.92 -16.44 -0.20 -3.35 16 9 N -0.55 -14.73 5.77 -10.36 -0.06 -14.79 16 10 H 0.42 10.97 6.28 -40.82 -0.26 10.72 16 11 C 0.23 6.39 6.71 -83.88 -0.56 5.82 16 12 C -0.44 -11.79 9.09 -38.25 -0.35 -12.14 16 13 H 0.09 2.29 7.44 -52.49 -0.39 1.90 16 14 C 0.06 1.59 5.50 -17.28 -0.09 1.49 16 15 N -0.86 -22.11 10.69 55.56 0.59 -21.51 16 16 Si 0.92 19.28 29.56 -169.99 -5.03 14.25 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.84 6.57 -51.93 -0.34 0.50 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.04 0.97 7.79 -51.93 -0.40 0.57 16 30 H 0.04 0.80 6.57 -51.93 -0.34 0.46 16 31 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 32 H 0.12 2.63 8.06 -52.48 -0.42 2.21 16 33 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 LS Contribution 271.90 15.07 4.10 4.10 Total: -1.00 -27.41 271.90 -7.55 -34.96 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -5.10 Total: 11.95 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: -2.06 Total: -28.96 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.53 Total: -36.30 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.41 -7.55 -34.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259808238.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.914 kcal (2) G-P(sol) polarization free energy of solvation -27.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds