Wall clock time and date at job start Mon Mar 30 2020 02:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46668 * 2 1 4 4 C 1.53001 * 109.47194 * 119.99429 * 2 1 3 5 5 C 1.53000 * 109.46886 * 175.00077 * 4 2 1 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 2 7 7 C 1.39304 * 126.47041 * 264.69205 * 6 5 4 8 8 C 1.35968 * 108.08650 * 179.89522 * 7 6 5 9 9 N 1.36169 * 109.05461 * 0.37148 * 8 7 6 10 10 H 0.96998 * 125.74427 * 179.80445 * 9 8 7 11 11 C 1.38017 * 108.51112 * 359.76805 * 9 8 7 12 12 C 1.39952 * 126.35821 * 180.02562 * 11 9 8 13 13 H 1.07989 * 120.00491 * 179.97438 * 12 11 9 14 14 C 1.40070 * 119.99437 * 359.97438 * 12 11 9 15 15 N 1.30861 * 120.00224 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00030 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46972 * 59.99288 * 16 14 12 18 18 H 1.48495 * 109.47325 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46705 * 299.99912 * 16 14 12 20 20 H 1.09004 * 109.47242 * 299.99746 * 1 2 3 21 21 H 1.09000 * 109.47237 * 60.00087 * 1 2 3 22 22 H 1.09002 * 109.46818 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47281 * 240.00284 * 2 1 3 24 24 H 1.09004 * 109.46932 * 299.99494 * 3 2 1 25 25 H 1.08994 * 109.47037 * 60.00135 * 3 2 1 26 26 H 1.09003 * 109.46480 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46652 * 55.00422 * 4 2 1 28 28 H 1.08992 * 109.47514 * 295.00511 * 4 2 1 29 29 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 30 30 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 31 31 H 1.07997 * 125.95653 * 0.02562 * 7 6 5 32 32 H 1.08008 * 125.47378 * 180.14597 * 8 7 6 33 33 H 0.97003 * 120.00309 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.8309 1.1880 6 6 4.0672 -1.5417 2.4182 7 6 4.5321 -0.9446 3.5877 8 6 4.8877 -1.9313 4.4530 9 7 4.6697 -3.1393 3.8636 10 1 4.8428 -4.0052 4.2651 11 6 4.1601 -2.9243 2.5991 12 6 3.8024 -3.9082 1.6703 13 1 3.4112 -3.6230 0.7050 14 6 3.9517 -5.2630 1.9930 15 7 4.4262 -5.6087 3.1626 16 14 3.4749 -6.5765 0.7532 17 1 4.2847 -6.4100 -0.4804 18 1 3.7278 -7.9199 1.3333 19 1 2.0337 -6.4435 0.4210 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.6766 1.9564 -0.8901 25 1 1.6766 1.9564 0.8899 26 1 3.1299 1.4426 -0.0005 27 1 1.6054 -1.7197 1.2952 28 1 1.7516 -0.1582 2.1370 29 1 3.8532 -1.3938 0.3003 30 1 3.9995 0.1677 1.1421 31 1 4.5968 0.1170 3.7753 32 1 5.2832 -1.7811 5.4468 33 1 4.5299 -6.5470 3.3859 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259808238.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:49 Heat of formation + Delta-G solvation = -17.626117 kcal Electronic energy + Delta-G solvation = -13455.855181 eV Core-core repulsion = 11286.826797 eV Total energy + Delta-G solvation = -2169.028383 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.87519 -37.57968 -35.30967 -32.95727 -30.45948 -29.24404 -27.89782 -26.23573 -23.98668 -21.29109 -20.65664 -20.07633 -18.87019 -17.21123 -16.31344 -15.97525 -15.00097 -14.75526 -14.38221 -14.24101 -14.02105 -13.87312 -13.15616 -12.95873 -12.88469 -12.65424 -12.50098 -12.40615 -12.25886 -11.98076 -11.63179 -11.41031 -11.20014 -11.17075 -11.04652 -8.96996 -8.74207 -8.70860 -6.11644 1.31927 1.38868 1.50651 2.05063 2.22758 2.48194 3.43658 3.46668 4.11276 4.19067 4.25443 4.59624 4.79991 4.86713 4.90845 4.95482 5.01362 5.03061 5.10618 5.18515 5.25358 5.31530 5.39511 5.50860 5.54966 5.65437 5.71524 5.79260 6.05159 6.20877 6.37560 6.85555 7.13046 7.29679 7.81792 8.38703 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.025706 B = 0.010571 C = 0.007910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.965495 B = 2648.145870 C = 3539.053409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 C -0.141 4.141 4 C -0.094 4.094 5 C -0.006 4.006 6 C -0.325 4.325 7 C -0.188 4.188 8 C -0.136 4.136 9 N -0.565 5.565 10 H 0.415 0.585 11 C 0.190 3.810 12 C -0.471 4.471 13 H 0.086 0.914 14 C 0.020 3.980 15 N -0.880 5.880 16 Si 0.995 3.005 17 H -0.262 1.262 18 H -0.270 1.270 19 H -0.262 1.262 20 H 0.053 0.947 21 H 0.068 0.932 22 H 0.045 0.955 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.034 0.966 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.056 0.944 31 H 0.121 0.879 32 H 0.153 0.847 33 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.396 5.255 -4.642 8.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 C -0.198 4.198 4 C -0.132 4.132 5 C -0.044 4.044 6 C -0.330 4.330 7 C -0.213 4.213 8 C -0.263 4.263 9 N -0.171 5.171 10 H 0.260 0.740 11 C 0.075 3.925 12 C -0.506 4.506 13 H 0.105 0.895 14 C -0.188 4.188 15 N -0.514 5.514 16 Si 0.817 3.183 17 H -0.186 1.186 18 H -0.195 1.195 19 H -0.186 1.186 20 H 0.072 0.928 21 H 0.087 0.913 22 H 0.065 0.935 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.139 0.861 32 H 0.171 0.829 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.290 4.958 -4.383 7.887 hybrid contribution 0.170 -1.093 0.254 1.135 sum -4.119 3.865 -4.129 6.997 Atomic orbital electron populations 1.21806 0.94668 1.01402 1.02054 1.21160 0.96173 0.96814 0.97494 1.21825 1.00993 0.95160 1.01858 1.21500 0.95777 0.98724 0.97192 1.19454 0.94368 0.97215 0.93387 1.19787 1.21905 0.91763 0.99522 1.20413 1.08525 0.96995 0.95414 1.21768 1.18214 0.85607 1.00724 1.42929 1.52281 1.08188 1.13745 0.74010 1.18367 0.95760 0.93473 0.84926 1.18961 1.40016 0.90264 1.01365 0.89546 1.26772 0.92542 1.01707 0.97766 1.68874 1.39582 1.20421 1.22547 0.85013 0.79555 0.75757 0.77988 1.18602 1.19500 1.18624 0.92792 0.91294 0.93550 0.91853 0.91516 0.92857 0.92996 0.94728 0.93592 0.94694 0.92528 0.86086 0.82930 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.19 71.98 0.66 -2.93 16 2 C -0.10 -2.88 2.92 -10.79 -0.03 -2.91 16 3 C -0.14 -3.58 8.95 71.98 0.64 -2.93 16 4 C -0.09 -3.58 4.66 30.59 0.14 -3.44 16 5 C -0.01 -0.27 5.19 29.85 0.15 -0.12 16 6 C -0.33 -16.64 5.50 -19.24 -0.11 -16.75 16 7 C -0.19 -9.11 10.74 22.00 0.24 -8.87 16 8 C -0.14 -6.62 11.92 83.49 0.99 -5.63 16 9 N -0.57 -30.47 5.77 -186.69 -1.08 -31.55 16 10 H 0.41 22.21 6.28 -92.71 -0.58 21.63 16 11 C 0.19 10.67 6.71 38.95 0.26 10.93 16 12 C -0.47 -25.89 9.09 23.13 0.21 -25.68 16 13 H 0.09 4.60 7.44 -2.92 -0.02 4.58 16 14 C 0.02 1.03 5.50 85.28 0.47 1.50 16 15 N -0.88 -45.66 10.69 21.86 0.23 -45.42 16 16 Si 1.00 39.32 29.56 68.60 2.03 41.35 16 17 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 18 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 19 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 20 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.05 1.37 6.57 -2.39 -0.02 1.36 16 27 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.03 1.53 7.79 -2.39 -0.02 1.51 16 30 H 0.06 2.20 6.57 -2.39 -0.02 2.18 16 31 H 0.12 5.14 8.06 -2.91 -0.02 5.12 16 32 H 0.15 6.32 8.06 -2.91 -0.02 6.29 16 33 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 Total: -1.00 -58.65 271.90 5.32 -53.33 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: 0.50 Total: 39.12 kcal Atomic # 6 Polarization: -60.47 SS G_CDS: 3.64 Total: -56.83 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -0.84 Total: -76.97 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -58.65 5.32 -53.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259808238.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.708 kcal (2) G-P(sol) polarization free energy of solvation -58.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds