Wall clock time and date at job start Mon Mar 30 2020 02:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35380 * 126.50387 * 2 1 4 4 N 1.30844 * 108.78665 * 180.25110 * 3 2 1 5 5 C 1.33288 * 109.10103 * 359.72179 * 4 3 2 6 6 C 1.35256 * 108.05372 * 0.08375 * 5 4 3 7 7 C 1.50619 * 123.73832 * 179.88797 * 6 5 4 8 8 H 1.09001 * 109.69871 * 103.35690 * 7 6 5 9 9 C 1.50694 * 109.70315 * 223.92670 * 7 6 5 10 10 H 1.08001 * 120.00296 * 33.08150 * 9 7 6 11 11 C 1.37878 * 119.99812 * 213.08029 * 9 7 6 12 12 N 1.31520 * 120.00221 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00256 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47235 * 90.00157 * 13 11 9 15 15 H 1.48498 * 109.47307 * 210.00404 * 13 11 9 16 16 H 1.48503 * 109.46889 * 330.00348 * 13 11 9 17 17 N 1.47318 * 108.27216 * 343.66705 * 7 6 5 18 18 C 1.46947 * 111.42142 * 51.05232 * 17 7 6 19 19 C 1.50925 * 128.92346 * 180.12599 * 5 4 3 20 20 H 1.08999 * 109.46735 * 264.59644 * 1 2 3 21 21 H 1.08997 * 109.47120 * 24.59285 * 1 2 3 22 22 H 1.09000 * 109.47326 * 144.59842 * 1 2 3 23 23 H 1.07998 * 125.60663 * 359.96654 * 3 2 1 24 24 H 0.97000 * 120.00252 * 179.97438 * 12 11 9 25 25 H 1.00900 * 111.00285 * 286.79329 * 17 7 6 26 26 H 1.09002 * 109.43382 * 48.79356 * 18 17 7 27 27 H 1.09003 * 109.43775 * 168.70315 * 18 17 7 28 28 H 1.09001 * 109.77422 * 44.39022 * 19 5 4 29 29 H 1.08995 * 109.82877 * 283.60051 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2703 1.0882 0.0000 4 7 3.5167 0.6900 -0.0054 5 6 3.5489 -0.6425 -0.0029 6 6 2.2734 -1.0926 0.0025 7 6 1.9014 -2.5521 0.0043 8 1 1.5851 -2.8494 1.0041 9 6 0.7817 -2.7922 -0.9752 10 1 0.7191 -2.2038 -1.8788 11 6 -0.1630 -3.7630 -0.7179 12 7 -0.0871 -4.4791 0.3826 13 14 -1.5515 -4.0602 -1.9317 14 1 -1.1318 -5.0829 -2.9232 15 1 -2.7521 -4.5413 -1.2022 16 1 -1.8743 -2.7925 -2.6346 17 7 3.0865 -3.3313 -0.3940 18 6 4.2645 -2.9616 0.4029 19 6 4.7456 -1.5621 -0.0044 20 1 -0.3633 -0.0968 1.0231 21 1 -0.3633 0.9344 -0.4277 22 1 -0.3634 -0.8377 -0.5953 23 1 1.9386 2.1160 -0.0005 24 1 -0.7519 -5.1619 0.5637 25 1 3.2711 -3.2299 -1.3808 26 1 4.0013 -2.9612 1.4606 27 1 5.0620 -3.6838 0.2279 28 1 5.4867 -1.2041 0.7103 29 1 5.1829 -1.5981 -1.0022 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259813641.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:36 Heat of formation + Delta-G solvation = 39.026331 kcal Electronic energy + Delta-G solvation = -13836.870314 eV Core-core repulsion = 11566.758222 eV Total energy + Delta-G solvation = -2270.112092 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.02747 -38.01320 -35.55847 -34.20653 -31.30792 -30.27711 -28.19185 -26.70696 -23.99392 -23.48671 -21.46802 -20.13132 -18.72221 -17.49361 -16.54203 -16.45466 -15.88757 -15.48640 -15.26261 -14.46816 -14.20993 -13.94727 -13.45488 -13.35022 -13.27713 -12.92760 -12.75037 -12.46622 -11.95415 -11.80514 -11.42817 -10.74295 -10.65832 -10.24235 -9.07341 -8.87190 -8.13884 -6.31967 1.31318 1.42482 1.46943 1.54007 2.18678 2.22707 2.41418 3.06922 3.66978 4.00481 4.09122 4.20142 4.33126 4.40524 4.53111 4.57613 4.77698 4.94317 4.95569 5.14811 5.15689 5.38509 5.52451 5.65759 5.92400 6.07802 6.55293 6.62904 6.85293 6.94617 7.25700 7.38792 8.91939 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.034405 B = 0.013405 C = 0.010457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.648585 B = 2088.255133 C = 2676.880915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.439 5.439 3 C 0.146 3.854 4 N -0.520 5.520 5 C -0.063 4.063 6 C -0.035 4.035 7 C 0.281 3.719 8 H 0.039 0.961 9 C -0.522 4.522 10 H 0.048 0.952 11 C 0.038 3.962 12 N -0.904 5.904 13 Si 0.954 3.046 14 H -0.280 1.280 15 H -0.282 1.282 16 H -0.262 1.262 17 N -0.677 5.677 18 C 0.059 3.941 19 C -0.054 4.054 20 H 0.072 0.928 21 H 0.114 0.886 22 H 0.089 0.911 23 H 0.240 0.760 24 H 0.265 0.735 25 H 0.330 0.670 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 6.762 -1.174 6.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.119 5.119 3 C -0.134 4.134 4 N -0.239 5.239 5 C -0.192 4.192 6 C -0.156 4.156 7 C 0.172 3.828 8 H 0.057 0.943 9 C -0.560 4.560 10 H 0.066 0.934 11 C -0.165 4.165 12 N -0.541 5.541 13 Si 0.779 3.221 14 H -0.206 1.206 15 H -0.207 1.207 16 H -0.186 1.186 17 N -0.305 5.305 18 C -0.072 4.072 19 C -0.094 4.094 20 H 0.090 0.910 21 H 0.133 0.867 22 H 0.107 0.893 23 H 0.256 0.744 24 H 0.074 0.926 25 H 0.147 0.853 26 H 0.068 0.932 27 H 0.113 0.887 28 H 0.098 0.902 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.012 6.591 -0.654 6.700 hybrid contribution -1.214 0.110 -0.724 1.418 sum -0.203 6.701 -1.379 6.844 Atomic orbital electron populations 1.22328 0.75179 1.05952 1.04035 1.44996 1.08714 1.06024 1.52177 1.25657 0.84983 0.94647 1.08137 1.69712 1.21114 1.11703 1.21343 1.20867 0.94700 0.91037 1.12610 1.23014 0.91292 0.93882 1.07364 1.17669 0.88685 0.79309 0.97126 0.94314 1.20879 1.09351 1.19676 1.06107 0.93375 1.25695 0.99747 0.94697 0.96361 1.70072 1.35984 1.22050 1.25969 0.85634 0.78563 0.78838 0.79032 1.20566 1.20744 1.18641 1.61279 1.03656 1.57526 1.08036 1.22142 0.93656 0.93651 0.97723 1.20646 0.93250 0.93553 1.01975 0.90983 0.86749 0.89295 0.74385 0.92589 0.85277 0.93155 0.88733 0.90248 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.15 10.90 127.77 1.39 3.54 15 2 N -0.44 -17.14 3.14 -537.72 -1.69 -18.83 15 3 C 0.15 5.17 12.57 180.05 2.26 7.43 15 4 N -0.52 -21.58 11.24 -187.75 -2.11 -23.69 15 5 C -0.06 -2.73 7.07 41.72 0.30 -2.44 15 6 C -0.03 -1.57 6.26 41.21 0.26 -1.32 15 7 C 0.28 14.06 2.88 43.32 0.12 14.18 15 8 H 0.04 2.25 7.35 -2.39 -0.02 2.24 15 9 C -0.52 -26.71 6.04 25.60 0.15 -26.55 15 10 H 0.05 2.48 7.65 -2.91 -0.02 2.46 15 11 C 0.04 1.97 5.46 84.65 0.46 2.43 15 12 N -0.90 -50.22 12.82 21.45 0.27 -49.94 15 13 Si 0.95 40.46 29.54 68.60 2.03 42.49 15 14 H -0.28 -11.96 7.11 99.48 0.71 -11.26 15 15 H -0.28 -11.75 7.11 99.48 0.71 -11.04 15 16 H -0.26 -10.52 7.11 99.48 0.71 -9.81 15 17 N -0.68 -31.02 6.59 -497.53 -3.28 -34.29 15 18 C 0.06 2.24 6.54 86.46 0.57 2.80 15 19 C -0.05 -2.00 6.43 30.09 0.19 -1.80 15 20 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 21 H 0.11 2.60 8.13 -2.39 -0.02 2.58 15 22 H 0.09 3.39 5.65 -2.39 -0.01 3.38 15 23 H 0.24 5.75 8.06 -2.91 -0.02 5.73 15 24 H 0.26 13.97 8.31 -92.71 -0.77 13.20 15 25 H 0.33 14.73 8.57 -89.69 -0.77 13.96 15 26 H 0.05 2.03 8.07 -2.39 -0.02 2.01 15 27 H 0.09 3.03 8.14 -2.39 -0.02 3.01 15 28 H 0.08 2.66 8.14 -2.39 -0.02 2.64 15 29 H 0.07 2.50 8.14 -2.39 -0.02 2.48 15 Total: -1.00 -63.53 243.16 1.32 -62.21 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.39 Total: 23.78 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 5.71 Total: -1.72 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -6.80 Total: -126.76 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -63.53 1.32 -62.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259813641.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.232 kcal (2) G-P(sol) polarization free energy of solvation -63.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds