Wall clock time and date at job start Mon Mar 30 2020 02:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30438 * 125.66446 * 2 1 4 4 N 1.39811 * 109.03526 * 180.02562 * 3 2 1 5 5 H 0.97002 * 126.10210 * 179.97438 * 4 3 2 6 6 C 1.38002 * 107.79675 * 359.97438 * 4 3 2 7 7 C 1.45918 * 141.24938 * 180.02562 * 6 4 3 8 8 C 1.41030 * 123.40194 * 359.95226 * 7 6 4 9 9 H 1.07999 * 119.99891 * 21.91642 * 8 7 6 10 10 C 1.39650 * 119.99929 * 201.91467 * 8 7 6 11 11 N 1.31109 * 120.00103 * 11.10693 * 10 8 7 12 12 Si 1.86798 * 120.00054 * 191.11171 * 10 8 7 13 13 H 1.48503 * 109.47108 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47168 * 119.99376 * 12 10 8 15 15 H 1.48495 * 109.46944 * 240.00185 * 12 10 8 16 16 C 1.36929 * 113.19322 * 179.97438 * 7 6 4 17 17 S 1.70110 * 111.55923 * 359.80010 * 16 7 6 18 18 C 1.37329 * 106.90728 * 0.02562 * 6 4 3 19 19 H 1.09000 * 109.47515 * 269.97847 * 1 2 3 20 20 H 1.09002 * 109.47639 * 29.98056 * 1 2 3 21 21 H 1.09006 * 109.47012 * 149.97887 * 1 2 3 22 22 H 0.96995 * 120.00074 * 180.02562 * 11 10 8 23 23 H 1.08008 * 124.22230 * 180.02562 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0597 0.0000 4 7 3.6072 0.6596 -0.0006 5 1 4.3791 1.2470 -0.0011 6 6 3.6353 -0.7201 -0.0004 7 6 4.5716 -1.8392 -0.0002 8 6 5.9728 -1.6792 -0.0013 9 1 6.4111 -0.7556 0.3469 10 6 6.7936 -2.7150 -0.4525 11 7 6.2693 -3.7434 -1.0742 12 14 8.6384 -2.6355 -0.1703 13 1 8.9755 -1.3804 0.5485 14 1 9.0655 -3.8022 0.6430 15 1 9.3407 -2.6600 -1.4784 16 6 3.9523 -3.0605 0.0005 17 16 2.2586 -2.9025 0.0067 18 6 2.3298 -1.1462 -0.0002 19 1 -0.3634 -0.0004 1.0276 20 1 -0.3634 0.8901 -0.5135 21 1 -0.3633 -0.8899 -0.5142 22 1 6.8393 -4.4631 -1.3873 23 1 4.4741 -4.0062 0.0012 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259850116.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:02 Heat of formation + Delta-G solvation = 75.593648 kcal Electronic energy + Delta-G solvation = -11054.917090 eV Core-core repulsion = 8995.591790 eV Total energy + Delta-G solvation = -2059.325300 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.14343 -35.15051 -32.36787 -31.75233 -27.83860 -27.29620 -25.57973 -21.67466 -19.45044 -19.19594 -17.60519 -16.32713 -14.94978 -14.31103 -14.04555 -13.45858 -12.85895 -12.48686 -12.44227 -12.24652 -11.63059 -11.24914 -10.94127 -10.85043 -10.44123 -10.10373 -9.95394 -9.35276 -9.20959 -8.76254 -7.29452 -6.75056 -6.59483 -4.30028 2.24988 2.84833 2.96581 3.08487 3.12564 3.25636 3.67430 3.84795 3.99462 4.02561 5.19706 5.33170 5.54125 5.92744 5.96021 6.19075 6.30970 6.65602 7.14031 7.17827 7.55111 7.89214 8.11434 8.29944 8.49552 8.71864 8.86188 10.29904 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.051926 B = 0.010609 C = 0.008970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.100899 B = 2638.719314 C = 3120.661127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.109 3.891 3 N -0.294 5.294 4 N -0.478 5.478 5 H 0.434 0.566 6 C 0.111 3.889 7 C 0.081 3.919 8 C -0.442 4.442 9 H 0.070 0.930 10 C 0.068 3.932 11 N -0.804 5.804 12 Si 0.913 3.087 13 H -0.264 1.264 14 H -0.273 1.273 15 H -0.276 1.276 16 C -0.316 4.316 17 S 0.066 5.934 18 C -0.298 4.298 19 H 0.072 0.928 20 H 0.068 0.932 21 H 0.074 0.926 22 H 0.277 0.723 23 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.152 2.287 1.347 4.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.064 4.064 3 N -0.116 5.116 4 N -0.192 5.192 5 H 0.278 0.722 6 C -0.021 4.021 7 C 0.068 3.932 8 C -0.476 4.476 9 H 0.089 0.911 10 C -0.147 4.147 11 N -0.432 5.432 12 Si 0.738 3.262 13 H -0.188 1.188 14 H -0.198 1.198 15 H -0.202 1.202 16 C -0.455 4.455 17 S 0.321 5.679 18 C -0.420 4.420 19 H 0.091 0.909 20 H 0.087 0.913 21 H 0.093 0.907 22 H 0.088 0.912 23 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.184 2.339 1.237 5.820 hybrid contribution 2.722 0.467 -0.016 2.762 sum -2.462 2.805 1.221 3.927 Atomic orbital electron populations 1.20121 0.87212 1.02796 1.02494 1.21499 0.95907 0.88351 1.00654 1.76611 0.86947 1.22588 1.25443 1.45749 1.05361 1.03521 1.64553 0.72247 1.20988 0.95442 0.84767 1.00912 1.16594 0.92114 0.85961 0.98499 1.18907 0.89712 1.00928 1.38074 0.91147 1.25683 1.00995 0.94915 0.93072 1.69847 1.37251 1.07897 1.28169 0.86184 0.82096 0.79214 0.78719 1.18802 1.19848 1.20153 1.24581 0.93179 1.01958 1.25816 1.81497 1.08187 0.95254 1.82979 1.23048 0.95844 0.99328 1.23814 0.90901 0.91260 0.90714 0.91248 0.81449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.45 36.01 0.38 -0.63 14 2 C 0.11 2.23 7.22 -82.10 -0.59 1.64 14 3 N -0.29 -6.20 12.62 33.85 0.43 -5.77 14 4 N -0.48 -10.37 7.49 33.25 0.25 -10.12 14 5 H 0.43 8.07 8.96 -182.81 -1.64 6.43 14 6 C 0.11 2.74 7.83 -82.35 -0.65 2.09 14 7 C 0.08 2.14 5.70 -106.24 -0.61 1.54 14 8 C -0.44 -11.65 9.25 -38.00 -0.35 -12.00 14 9 H 0.07 1.76 7.87 -52.49 -0.41 1.35 14 10 C 0.07 1.73 5.36 -17.33 -0.09 1.63 14 11 N -0.80 -20.91 10.78 55.53 0.60 -20.31 14 12 Si 0.91 18.88 29.57 -169.99 -5.03 13.85 14 13 H -0.26 -5.39 7.11 56.52 0.40 -4.99 14 14 H -0.27 -5.57 7.11 56.52 0.40 -5.17 14 15 H -0.28 -5.64 7.11 56.52 0.40 -5.24 14 16 C -0.32 -8.21 9.56 30.26 0.29 -7.92 14 17 S 0.07 1.48 22.98 -107.50 -2.47 -1.00 14 18 C -0.30 -6.90 7.15 -38.83 -0.28 -7.17 14 19 H 0.07 0.97 8.14 -51.93 -0.42 0.54 14 20 H 0.07 0.91 8.14 -51.93 -0.42 0.49 14 21 H 0.07 1.04 8.14 -51.93 -0.42 0.62 14 22 H 0.28 6.57 8.30 -40.82 -0.34 6.23 14 23 H 0.17 4.53 6.27 -52.48 -0.33 4.20 14 LS Contribution 223.12 15.07 3.36 3.36 Total: -1.00 -28.80 223.12 -7.54 -36.34 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -2.78 Total: 4.46 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -1.90 Total: -20.82 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 1.28 Total: -36.20 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.47 Total: -1.00 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -28.80 -7.54 -36.34 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259850116.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.934 kcal (2) G-P(sol) polarization free energy of solvation -28.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds