Wall clock time and date at job start Mon Mar 30 2020 02:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30438 * 125.66446 * 2 1 4 4 N 1.39811 * 109.03526 * 180.02562 * 3 2 1 5 5 H 0.97002 * 126.10210 * 179.97438 * 4 3 2 6 6 C 1.38002 * 107.79675 * 359.97438 * 4 3 2 7 7 C 1.45918 * 141.24938 * 180.02562 * 6 4 3 8 8 C 1.41030 * 123.40194 * 359.95226 * 7 6 4 9 9 H 1.07999 * 119.99891 * 21.91642 * 8 7 6 10 10 C 1.39650 * 119.99929 * 201.91467 * 8 7 6 11 11 N 1.31109 * 120.00103 * 11.10693 * 10 8 7 12 12 Si 1.86798 * 120.00054 * 191.11171 * 10 8 7 13 13 H 1.48503 * 109.47108 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47168 * 119.99376 * 12 10 8 15 15 H 1.48495 * 109.46944 * 240.00185 * 12 10 8 16 16 C 1.36929 * 113.19322 * 179.97438 * 7 6 4 17 17 S 1.70110 * 111.55923 * 359.80010 * 16 7 6 18 18 C 1.37329 * 106.90728 * 0.02562 * 6 4 3 19 19 H 1.09000 * 109.47515 * 269.97847 * 1 2 3 20 20 H 1.09002 * 109.47639 * 29.98056 * 1 2 3 21 21 H 1.09006 * 109.47012 * 149.97887 * 1 2 3 22 22 H 0.96995 * 120.00074 * 180.02562 * 11 10 8 23 23 H 1.08008 * 124.22230 * 180.02562 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0597 0.0000 4 7 3.6072 0.6596 -0.0006 5 1 4.3791 1.2470 -0.0011 6 6 3.6353 -0.7201 -0.0004 7 6 4.5716 -1.8392 -0.0002 8 6 5.9728 -1.6792 -0.0013 9 1 6.4111 -0.7556 0.3469 10 6 6.7936 -2.7150 -0.4525 11 7 6.2693 -3.7434 -1.0742 12 14 8.6384 -2.6355 -0.1703 13 1 8.9755 -1.3804 0.5485 14 1 9.0655 -3.8022 0.6430 15 1 9.3407 -2.6600 -1.4784 16 6 3.9523 -3.0605 0.0005 17 16 2.2586 -2.9025 0.0067 18 6 2.3298 -1.1462 -0.0002 19 1 -0.3634 -0.0004 1.0276 20 1 -0.3634 0.8901 -0.5135 21 1 -0.3633 -0.8899 -0.5142 22 1 6.8393 -4.4631 -1.3873 23 1 4.4741 -4.0062 0.0012 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259850116.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:01 Heat of formation + Delta-G solvation = 57.448141 kcal Electronic energy + Delta-G solvation = -11055.703938 eV Core-core repulsion = 8995.591790 eV Total energy + Delta-G solvation = -2060.112148 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.85103 -37.02792 -34.17865 -33.36102 -29.68197 -28.76454 -27.46289 -23.53899 -21.09642 -21.02273 -19.35104 -18.25390 -16.71709 -15.94655 -15.80158 -15.14939 -14.70742 -14.04714 -13.79344 -13.64045 -13.32104 -12.92700 -12.74867 -12.56714 -12.22360 -11.83845 -11.70234 -11.21442 -11.05867 -10.43358 -9.16784 -8.62883 -8.43153 -6.26570 0.41891 1.08855 1.31432 1.38973 1.52701 1.59860 1.94895 2.03492 2.12477 2.24009 3.24347 3.80330 4.09206 4.27329 4.75921 4.84673 4.98642 5.01797 5.20393 5.54163 5.64602 5.90949 6.31758 6.50542 6.71834 6.80019 6.91353 8.42059 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.051926 B = 0.010609 C = 0.008970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.100899 B = 2638.719314 C = 3120.661127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.111 3.889 3 N -0.293 5.293 4 N -0.477 5.477 5 H 0.443 0.557 6 C 0.079 3.921 7 C 0.058 3.942 8 C -0.473 4.473 9 H 0.072 0.928 10 C 0.026 3.974 11 N -0.833 5.833 12 Si 0.987 3.013 13 H -0.260 1.260 14 H -0.266 1.266 15 H -0.269 1.269 16 C -0.349 4.349 17 S 0.118 5.882 18 C -0.313 4.313 19 H 0.095 0.905 20 H 0.090 0.910 21 H 0.086 0.914 22 H 0.284 0.716 23 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.650 2.872 1.491 5.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.063 4.063 3 N -0.115 5.115 4 N -0.192 5.192 5 H 0.288 0.712 6 C -0.054 4.054 7 C 0.045 3.955 8 C -0.507 4.507 9 H 0.091 0.909 10 C -0.186 4.186 11 N -0.461 5.461 12 Si 0.809 3.191 13 H -0.183 1.183 14 H -0.191 1.191 15 H -0.194 1.194 16 C -0.487 4.487 17 S 0.373 5.627 18 C -0.436 4.436 19 H 0.113 0.887 20 H 0.109 0.891 21 H 0.105 0.895 22 H 0.095 0.905 23 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.696 2.932 1.381 6.553 hybrid contribution 2.800 0.296 -0.072 2.816 sum -2.896 3.228 1.308 4.529 Atomic orbital electron populations 1.20350 0.83206 1.04517 1.04450 1.22330 0.98281 0.86806 0.98903 1.76609 0.86618 1.22907 1.25363 1.45809 1.06159 1.02693 1.64496 0.71153 1.20973 0.95755 0.85816 1.02823 1.16943 0.92932 0.87045 0.98575 1.19231 0.90386 1.01804 1.39312 0.90940 1.26594 1.05752 0.94110 0.92168 1.69924 1.39232 1.08551 1.28433 0.85066 0.75859 0.79384 0.78814 1.18343 1.19119 1.19374 1.24589 0.95864 1.01289 1.27005 1.81040 1.04765 0.94545 1.82362 1.23521 0.96139 1.00429 1.23482 0.88677 0.89100 0.89475 0.90524 0.83288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.76 10.45 71.24 0.74 -1.02 14 2 C 0.11 4.29 7.22 43.47 0.31 4.60 14 3 N -0.29 -11.87 12.62 -46.81 -0.59 -12.46 14 4 N -0.48 -20.46 7.49 -48.72 -0.36 -20.83 14 5 H 0.44 16.44 8.96 -213.50 -1.91 14.53 14 6 C 0.08 3.88 7.83 39.95 0.31 4.20 14 7 C 0.06 3.14 5.70 -20.91 -0.12 3.02 14 8 C -0.47 -25.46 9.25 23.30 0.22 -25.24 14 9 H 0.07 3.71 7.87 -2.91 -0.02 3.68 14 10 C 0.03 1.34 5.36 85.14 0.46 1.79 14 11 N -0.83 -44.05 10.78 21.79 0.23 -43.82 14 12 Si 0.99 38.66 29.57 68.60 2.03 40.69 14 13 H -0.26 -9.88 7.11 99.48 0.71 -9.18 14 14 H -0.27 -10.07 7.11 99.48 0.71 -9.36 14 15 H -0.27 -10.14 7.11 99.48 0.71 -9.44 14 16 C -0.35 -18.48 9.56 67.51 0.65 -17.83 14 17 S 0.12 5.18 22.98 -56.49 -1.30 3.89 14 18 C -0.31 -14.19 7.15 22.76 0.16 -14.03 14 19 H 0.09 2.14 8.14 -2.39 -0.02 2.12 14 20 H 0.09 2.03 8.14 -2.39 -0.02 2.01 14 21 H 0.09 2.10 8.14 -2.38 -0.02 2.08 14 22 H 0.28 13.61 8.30 -92.71 -0.77 12.84 14 23 H 0.15 8.36 6.27 -2.91 -0.02 8.34 14 Total: -1.00 -61.50 223.12 2.08 -59.42 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -0.66 Total: 17.63 kcal Atomic # 6 Polarization: -47.25 SS G_CDS: 2.73 Total: -44.51 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -0.72 Total: -77.11 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Atomic # 16 Polarization: 5.18 SS G_CDS: -1.30 Total: 3.89 kcal Total: -61.50 2.08 -59.42 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259850116.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.866 kcal (2) G-P(sol) polarization free energy of solvation -61.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds