Wall clock time and date at job start Mon Mar 30 2020 02:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46986 * 2 1 4 4 N 1.46501 * 109.47168 * 120.00009 * 2 1 3 5 5 C 1.36832 * 120.00064 * 295.72475 * 4 2 1 6 6 H 1.07994 * 119.99843 * 314.22574 * 5 4 2 7 7 C 1.38804 * 119.99970 * 134.21803 * 5 4 2 8 8 N 1.31589 * 119.99830 * 344.68951 * 7 5 4 9 9 Si 1.86801 * 119.99865 * 164.68521 * 7 5 4 10 10 H 1.48498 * 109.47041 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47105 * 120.00308 * 9 7 5 12 12 H 1.48497 * 109.46901 * 240.00249 * 9 7 5 13 13 C 1.39349 * 119.99720 * 115.72169 * 4 2 1 14 14 C 1.39450 * 120.88653 * 173.41703 * 13 4 2 15 15 N 1.32224 * 118.99066 * 179.70814 * 14 13 4 16 16 C 1.31828 * 120.91060 * 0.27044 * 15 14 13 17 17 N 1.31818 * 121.97466 * 0.02562 * 16 15 14 18 18 C 1.32226 * 120.91520 * 359.97438 * 17 16 15 19 19 H 1.08999 * 109.47359 * 306.37642 * 1 2 3 20 20 H 1.09004 * 109.47146 * 66.38475 * 1 2 3 21 21 H 1.09002 * 109.46853 * 186.38162 * 1 2 3 22 22 H 1.09006 * 109.47027 * 239.99866 * 2 1 3 23 23 H 1.08998 * 109.46957 * 172.76961 * 3 2 1 24 24 H 1.09003 * 109.47022 * 292.76836 * 3 2 1 25 25 H 1.08994 * 109.47188 * 52.77041 * 3 2 1 26 26 H 0.97010 * 119.99351 * 180.02562 * 8 7 5 27 27 H 1.08001 * 120.50209 * 359.97438 * 14 13 4 28 28 H 1.07999 * 119.01146 * 179.97438 * 16 15 14 29 29 H 1.08000 * 120.51081 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7615 -0.1743 2.4371 6 1 1.9076 0.8791 2.6244 7 6 1.3130 -1.0046 3.4550 8 7 0.8490 -2.2027 3.1704 9 14 1.3682 -0.4213 5.2287 10 1 1.9286 0.9529 5.2806 11 1 -0.0060 -0.4166 5.7912 12 1 2.2256 -1.3363 6.0242 13 6 2.7444 -1.8733 1.0702 14 6 3.3339 -2.4733 2.1824 15 7 4.0096 -3.5983 2.0209 16 6 4.1338 -4.1486 0.8293 17 7 3.5970 -3.6102 -0.2475 18 6 2.9056 -2.4856 -0.1722 19 1 -0.3634 0.6095 0.8274 20 1 -0.3634 0.4117 -0.9416 21 1 -0.3633 -1.0213 0.1142 22 1 1.8933 -0.5139 -0.8900 23 1 3.1222 1.4452 0.1293 24 1 1.7861 1.9176 -0.9476 25 1 1.5749 1.9923 0.8182 26 1 0.5352 -2.7828 3.8819 27 1 3.2363 -2.0282 3.1616 28 1 4.6928 -5.0675 0.7325 29 1 2.4682 -2.0505 -1.0586 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259863487.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:01 Heat of formation + Delta-G solvation = 54.569394 kcal Electronic energy + Delta-G solvation = -13842.301544 eV Core-core repulsion = 11572.863449 eV Total energy + Delta-G solvation = -2269.438095 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.61311 -37.03757 -33.31646 -32.02922 -31.21849 -28.41186 -26.55151 -25.13558 -23.07748 -22.12473 -20.01482 -17.52225 -16.49988 -16.04721 -15.17395 -14.97442 -13.74103 -13.56369 -13.39596 -12.80521 -12.36878 -12.25288 -11.94455 -11.74675 -11.34106 -11.20409 -10.97676 -10.60875 -10.45212 -10.16355 -9.86186 -9.50836 -9.30624 -8.85534 -7.88662 -6.74639 -6.14839 -4.16219 2.45960 2.61418 3.10617 3.17637 3.20238 3.97961 4.64587 4.79445 5.23303 5.38499 5.57780 5.69242 5.83749 5.91353 6.00073 6.12899 6.28517 6.42439 6.43759 6.48750 6.70791 6.80271 6.98256 7.22883 7.33864 7.68289 7.98205 8.32540 8.65966 9.05192 9.49658 9.56663 10.53886 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.017493 C = 0.011500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.966722 B = 1600.254441 C = 2434.161905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.130 3.870 3 C -0.151 4.151 4 N -0.434 5.434 5 C -0.320 4.320 6 H 0.088 0.912 7 C 0.036 3.964 8 N -0.842 5.842 9 Si 0.910 3.090 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.275 1.275 13 C 0.155 3.845 14 C 0.100 3.900 15 N -0.494 5.494 16 C 0.148 3.852 17 N -0.490 5.490 18 C 0.006 3.994 19 H 0.060 0.940 20 H 0.044 0.956 21 H 0.056 0.944 22 H 0.070 0.930 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.272 0.728 27 H 0.155 0.845 28 H 0.165 0.835 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.302 4.428 -2.953 5.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.025 3.975 3 C -0.209 4.209 4 N -0.124 5.124 5 C -0.449 4.449 6 H 0.105 0.895 7 C -0.172 4.172 8 N -0.474 5.474 9 Si 0.736 3.264 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.200 1.200 13 C 0.035 3.965 14 C -0.077 4.077 15 N -0.208 5.208 16 C -0.139 4.139 17 N -0.204 5.204 18 C -0.167 4.167 19 H 0.080 0.920 20 H 0.063 0.937 21 H 0.075 0.925 22 H 0.088 0.912 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.172 0.828 28 H 0.182 0.818 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.569 3.625 -2.948 4.707 hybrid contribution -0.794 0.824 1.043 1.548 sum -0.224 4.448 -1.906 4.845 Atomic orbital electron populations 1.21993 0.95687 1.02440 1.00274 1.21084 0.94160 0.92983 0.89263 1.22046 1.01166 0.96719 1.00998 1.42252 1.45867 1.19847 1.04435 1.19263 1.44423 0.95404 0.85788 0.89467 1.25576 0.94839 0.96126 1.00675 1.70048 1.35107 1.08496 1.33756 0.86118 0.78280 0.79344 0.82641 1.19068 1.20589 1.20019 1.19516 0.90871 0.90899 0.95172 1.22536 0.94742 0.91838 0.98556 1.67985 1.15822 1.10199 1.26751 1.23685 1.04327 1.01753 0.84150 1.67795 1.08505 1.09870 1.34183 1.22226 1.04107 0.94606 0.95717 0.92042 0.93727 0.92526 0.91180 0.92888 0.93058 0.92056 0.91732 0.82762 0.81790 0.84189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.14 37.16 0.34 -2.30 15 2 C 0.13 2.44 3.17 -67.93 -0.22 2.23 15 3 C -0.15 -2.45 8.89 37.16 0.33 -2.12 15 4 N -0.43 -9.92 2.53 -105.84 -0.27 -10.19 15 5 C -0.32 -7.63 7.81 -15.11 -0.12 -7.75 15 6 H 0.09 2.02 7.03 -52.49 -0.37 1.65 15 7 C 0.04 0.88 3.28 -17.45 -0.06 0.82 15 8 N -0.84 -22.11 11.40 55.49 0.63 -21.48 15 9 Si 0.91 19.13 29.57 -169.99 -5.03 14.10 15 10 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 11 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 13 C 0.15 3.74 5.84 -83.54 -0.49 3.25 15 14 C 0.10 2.52 8.90 -16.93 -0.15 2.37 15 15 N -0.49 -12.13 10.43 -14.38 -0.15 -12.28 15 16 C 0.15 3.38 12.27 -92.10 -1.13 2.25 15 17 N -0.49 -11.31 10.43 -14.38 -0.15 -11.46 15 18 C 0.01 0.13 10.53 -16.93 -0.18 -0.05 15 19 H 0.06 1.16 7.93 -51.93 -0.41 0.75 15 20 H 0.04 0.66 8.14 -51.93 -0.42 0.23 15 21 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 22 H 0.07 1.25 5.47 -51.93 -0.28 0.96 15 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 15 25 H 0.06 1.02 7.33 -51.93 -0.38 0.64 15 26 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 27 H 0.16 4.02 5.63 -52.49 -0.30 3.73 15 28 H 0.17 3.16 8.06 -52.49 -0.42 2.74 15 29 H 0.14 2.83 5.97 -52.49 -0.31 2.51 15 LS Contribution 243.82 15.07 3.67 3.67 Total: -1.00 -27.44 243.82 -6.26 -33.70 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -3.30 Total: 5.23 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.67 Total: -1.30 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.07 Total: -55.40 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -27.44 -6.26 -33.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259863487.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.267 kcal (2) G-P(sol) polarization free energy of solvation -27.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds