Wall clock time and date at job start Mon Mar 30 2020 02:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46986 * 2 1 4 4 N 1.46501 * 109.47168 * 120.00009 * 2 1 3 5 5 C 1.36832 * 120.00064 * 295.72475 * 4 2 1 6 6 H 1.07994 * 119.99843 * 314.22574 * 5 4 2 7 7 C 1.38804 * 119.99970 * 134.21803 * 5 4 2 8 8 N 1.31589 * 119.99830 * 344.68951 * 7 5 4 9 9 Si 1.86801 * 119.99865 * 164.68521 * 7 5 4 10 10 H 1.48498 * 109.47041 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47105 * 120.00308 * 9 7 5 12 12 H 1.48497 * 109.46901 * 240.00249 * 9 7 5 13 13 C 1.39349 * 119.99720 * 115.72169 * 4 2 1 14 14 C 1.39450 * 120.88653 * 173.41703 * 13 4 2 15 15 N 1.32224 * 118.99066 * 179.70814 * 14 13 4 16 16 C 1.31828 * 120.91060 * 0.27044 * 15 14 13 17 17 N 1.31818 * 121.97466 * 0.02562 * 16 15 14 18 18 C 1.32226 * 120.91520 * 359.97438 * 17 16 15 19 19 H 1.08999 * 109.47359 * 306.37642 * 1 2 3 20 20 H 1.09004 * 109.47146 * 66.38475 * 1 2 3 21 21 H 1.09002 * 109.46853 * 186.38162 * 1 2 3 22 22 H 1.09006 * 109.47027 * 239.99866 * 2 1 3 23 23 H 1.08998 * 109.46957 * 172.76961 * 3 2 1 24 24 H 1.09003 * 109.47022 * 292.76836 * 3 2 1 25 25 H 1.08994 * 109.47188 * 52.77041 * 3 2 1 26 26 H 0.97010 * 119.99351 * 180.02562 * 8 7 5 27 27 H 1.08001 * 120.50209 * 359.97438 * 14 13 4 28 28 H 1.07999 * 119.01146 * 179.97438 * 16 15 14 29 29 H 1.08000 * 120.51081 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7615 -0.1743 2.4371 6 1 1.9076 0.8791 2.6244 7 6 1.3130 -1.0046 3.4550 8 7 0.8490 -2.2027 3.1704 9 14 1.3682 -0.4213 5.2287 10 1 1.9286 0.9529 5.2806 11 1 -0.0060 -0.4166 5.7912 12 1 2.2256 -1.3363 6.0242 13 6 2.7444 -1.8733 1.0702 14 6 3.3339 -2.4733 2.1824 15 7 4.0096 -3.5983 2.0209 16 6 4.1338 -4.1486 0.8293 17 7 3.5970 -3.6102 -0.2475 18 6 2.9056 -2.4856 -0.1722 19 1 -0.3634 0.6095 0.8274 20 1 -0.3634 0.4117 -0.9416 21 1 -0.3633 -1.0213 0.1142 22 1 1.8933 -0.5139 -0.8900 23 1 3.1222 1.4452 0.1293 24 1 1.7861 1.9176 -0.9476 25 1 1.5749 1.9923 0.8182 26 1 0.5352 -2.7828 3.8819 27 1 3.2363 -2.0282 3.1616 28 1 4.6928 -5.0675 0.7325 29 1 2.4682 -2.0505 -1.0586 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259863487.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:01 Heat of formation + Delta-G solvation = 38.978741 kcal Electronic energy + Delta-G solvation = -13842.977605 eV Core-core repulsion = 11572.863449 eV Total energy + Delta-G solvation = -2270.114156 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.40799 -38.72382 -35.04918 -33.82630 -32.96425 -30.19503 -27.92156 -26.95500 -24.88328 -23.90472 -21.64011 -19.30736 -18.27153 -17.82932 -16.86799 -16.78214 -15.43685 -15.32915 -14.92173 -14.39674 -14.14186 -13.99223 -13.62767 -13.29213 -12.88480 -12.70891 -12.64940 -12.20057 -12.03751 -11.81946 -11.47536 -11.34287 -11.06597 -10.72137 -9.73352 -8.60798 -7.96460 -6.03806 0.61864 0.78548 1.41680 1.45345 1.54500 2.24545 2.91242 3.01749 3.41686 3.72604 3.90766 4.09449 4.20637 4.39795 4.42043 4.64029 4.87668 4.90168 4.98541 5.06146 5.06863 5.37337 5.39814 5.47843 5.52276 5.91316 6.14151 6.48938 6.81285 7.28256 7.66256 7.73914 8.67143 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.017493 C = 0.011500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.966722 B = 1600.254441 C = 2434.161905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.119 3.881 3 C -0.142 4.142 4 N -0.441 5.441 5 C -0.321 4.321 6 H 0.094 0.906 7 C -0.001 4.001 8 N -0.877 5.877 9 Si 0.966 3.034 10 H -0.253 1.253 11 H -0.281 1.281 12 H -0.284 1.284 13 C 0.139 3.861 14 C 0.075 3.925 15 N -0.508 5.508 16 C 0.141 3.859 17 N -0.493 5.493 18 C 0.009 3.991 19 H 0.048 0.952 20 H 0.083 0.917 21 H 0.026 0.974 22 H 0.083 0.917 23 H 0.045 0.955 24 H 0.086 0.914 25 H 0.053 0.947 26 H 0.267 0.733 27 H 0.138 0.862 28 H 0.197 0.803 29 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.320 5.501 -4.007 6.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.016 3.984 3 C -0.200 4.200 4 N -0.131 5.131 5 C -0.450 4.450 6 H 0.111 0.889 7 C -0.205 4.205 8 N -0.511 5.511 9 Si 0.791 3.209 10 H -0.177 1.177 11 H -0.207 1.207 12 H -0.210 1.210 13 C 0.019 3.981 14 C -0.100 4.100 15 N -0.222 5.222 16 C -0.146 4.146 17 N -0.206 5.206 18 C -0.164 4.164 19 H 0.067 0.933 20 H 0.102 0.898 21 H 0.045 0.955 22 H 0.101 0.899 23 H 0.064 0.936 24 H 0.105 0.895 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.155 0.845 28 H 0.214 0.786 29 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.586 4.735 -4.007 6.230 hybrid contribution -0.787 0.501 1.288 1.590 sum -0.201 5.235 -2.719 5.903 Atomic orbital electron populations 1.21904 0.95092 1.00529 1.01862 1.21414 0.94639 0.94318 0.88047 1.21965 1.00468 0.94829 1.02716 1.42546 1.45505 1.19570 1.05473 1.19507 1.43302 0.95583 0.86635 0.88869 1.26208 0.94525 0.96022 1.03772 1.70156 1.36848 1.09747 1.34311 0.85257 0.77842 0.79215 0.78607 1.17660 1.20662 1.21016 1.19681 0.91279 0.91757 0.95387 1.22372 0.96361 0.92810 0.98499 1.67957 1.16172 1.10257 1.27784 1.24337 1.04180 1.02558 0.83563 1.67884 1.08640 1.09949 1.34152 1.22660 1.03353 0.94296 0.96119 0.93326 0.89795 0.95505 0.89895 0.93568 0.89494 0.92755 0.92383 0.84451 0.78615 0.81584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 9.14 71.98 0.66 -3.99 15 2 C 0.12 4.23 3.17 44.99 0.14 4.37 15 3 C -0.14 -4.19 8.89 71.98 0.64 -3.55 15 4 N -0.44 -19.83 2.53 -488.77 -1.24 -21.07 15 5 C -0.32 -15.18 7.81 84.05 0.66 -14.53 15 6 H 0.09 4.22 7.03 -2.91 -0.02 4.20 15 7 C 0.00 -0.04 3.28 84.86 0.28 0.24 15 8 N -0.88 -46.85 11.40 21.65 0.25 -46.60 15 9 Si 0.97 39.46 29.57 68.60 2.03 41.49 15 10 H -0.25 -9.68 7.11 99.48 0.71 -8.97 15 11 H -0.28 -11.41 7.11 99.48 0.71 -10.70 15 12 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 13 C 0.14 6.67 5.84 38.53 0.23 6.89 15 14 C 0.08 3.84 8.90 84.93 0.76 4.60 15 15 N -0.51 -24.93 10.43 -199.40 -2.08 -27.01 15 16 C 0.14 6.25 12.27 180.87 2.22 8.47 15 17 N -0.49 -21.97 10.43 -199.40 -2.08 -24.05 15 18 C 0.01 0.39 10.53 84.92 0.89 1.29 15 19 H 0.05 1.76 7.93 -2.39 -0.02 1.74 15 20 H 0.08 2.18 8.14 -2.38 -0.02 2.16 15 21 H 0.03 1.05 8.14 -2.39 -0.02 1.03 15 22 H 0.08 2.71 5.47 -2.38 -0.01 2.70 15 23 H 0.05 1.42 8.14 -2.39 -0.02 1.40 15 24 H 0.09 1.95 8.14 -2.39 -0.02 1.93 15 25 H 0.05 1.67 7.33 -2.39 -0.02 1.65 15 26 H 0.27 13.95 8.31 -92.70 -0.77 13.18 15 27 H 0.14 7.36 5.63 -2.91 -0.02 7.34 15 28 H 0.20 7.15 8.06 -2.91 -0.02 7.13 15 29 H 0.17 6.28 5.97 -2.91 -0.02 6.27 15 Total: -1.00 -58.10 243.82 4.50 -53.60 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 1.15 Total: 19.83 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 6.47 Total: 3.80 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -5.15 Total: -118.73 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -58.10 4.50 -53.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259863487.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.583 kcal (2) G-P(sol) polarization free energy of solvation -58.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds