Wall clock time and date at job start Mon Mar 30 2020 02:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00042 * 2 1 4 4 H 1.48497 * 109.47226 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47116 * 299.99599 * 3 2 1 6 6 H 1.48501 * 109.46855 * 59.99516 * 3 2 1 7 7 C 1.37878 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00282 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00191 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47549 * 179.97438 * 9 7 2 11 11 N 1.30337 * 125.66782 * 270.33010 * 10 9 7 12 12 N 1.39757 * 109.20170 * 180.16363 * 11 10 9 13 13 H 0.97001 * 126.05155 * 179.81531 * 12 11 10 14 14 C 1.38573 * 107.90349 * 359.54348 * 12 11 10 15 15 C 1.40099 * 140.49729 * 180.26061 * 14 12 11 16 16 C 1.32526 * 115.57409 * 180.02562 * 15 14 12 17 17 S 1.75597 * 110.48599 * 359.97438 * 16 15 14 18 18 C 1.37941 * 106.40640 * 0.26853 * 14 12 11 19 19 H 0.97003 * 119.99971 * 0.02562 * 1 2 3 20 20 H 1.08995 * 109.47358 * 59.99014 * 9 7 2 21 21 H 1.09005 * 109.46876 * 299.99413 * 9 7 2 22 22 H 1.07995 * 122.21106 * 0.02880 * 15 14 12 23 23 H 1.08000 * 124.75721 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 7 2.7289 -4.2183 -1.0583 12 7 3.5952 -5.2410 -0.6622 13 1 4.0954 -5.8260 -1.2525 14 6 3.6179 -5.2673 0.7231 15 6 4.2145 -5.9651 1.7814 16 6 3.8710 -5.5639 2.9969 17 16 2.7317 -4.2309 2.9050 18 6 2.7646 -4.2694 1.1458 19 1 -0.4850 0.8401 -0.0004 20 1 0.6247 -2.5571 -0.8895 21 1 0.6242 -2.5567 0.8904 22 1 4.9084 -6.7762 1.6174 23 1 4.2407 -5.9958 3.9152 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259889165.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:30 Heat of formation + Delta-G solvation = 88.368532 kcal Electronic energy + Delta-G solvation = -10905.297253 eV Core-core repulsion = 8846.525913 eV Total energy + Delta-G solvation = -2058.771340 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.56095 -35.32807 -33.35466 -31.26747 -28.16711 -27.70167 -23.41698 -23.00947 -19.75590 -19.43433 -17.77332 -16.33158 -15.03747 -14.57419 -14.34648 -14.02916 -13.98759 -12.59795 -12.24927 -11.89916 -11.42105 -11.24905 -10.74566 -10.71518 -10.43901 -10.07359 -9.85888 -9.63024 -8.93220 -8.41849 -8.08786 -7.26061 -6.03980 -4.06916 1.25008 1.93557 2.51901 2.98266 3.31682 3.32193 3.34956 3.40232 3.47478 4.46908 5.02020 5.30984 5.33387 5.57345 5.69395 5.98732 6.24540 6.45753 7.12938 7.41791 7.51020 7.82778 7.91668 8.27387 8.39092 8.95624 9.56237 11.06536 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.042104 B = 0.009680 C = 0.008837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.864762 B = 2891.789980 C = 3167.574287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.508 4.508 8 H 0.057 0.943 9 C 0.085 3.915 10 C 0.171 3.829 11 N -0.269 5.269 12 N -0.494 5.494 13 H 0.432 0.568 14 C 0.076 3.924 15 C -0.127 4.127 16 C -0.194 4.194 17 S 0.161 5.839 18 C -0.266 4.266 19 H 0.262 0.738 20 H 0.041 0.959 21 H 0.041 0.959 22 H 0.135 0.865 23 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.782 -10.454 5.242 13.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.547 4.547 8 H 0.076 0.924 9 C 0.046 3.954 10 C -0.003 4.003 11 N -0.088 5.088 12 N -0.209 5.209 13 H 0.276 0.724 14 C -0.052 4.052 15 C -0.163 4.163 16 C -0.333 4.333 17 S 0.420 5.580 18 C -0.391 4.391 19 H 0.072 0.928 20 H 0.059 0.941 21 H 0.060 0.940 22 H 0.153 0.847 23 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.900 -9.487 5.001 12.240 hybrid contribution 1.588 -0.337 -0.566 1.719 sum 7.489 -9.824 4.435 13.125 Atomic orbital electron populations 1.69958 1.05970 1.26841 1.50376 1.24957 0.94899 0.99213 0.95051 0.86434 0.80110 0.83292 0.77632 1.19710 1.20890 1.20839 1.20948 0.93088 0.89492 1.51215 0.92434 1.17945 0.91171 0.87086 0.99239 1.22753 0.96216 0.95484 0.85811 1.76949 1.07777 1.01671 1.22389 1.46158 1.41347 1.31475 1.01870 0.72428 1.19113 1.00704 0.98995 0.86366 1.18779 1.04562 1.03162 0.89753 1.25356 1.04479 1.02761 1.00661 1.83915 1.44179 1.31942 0.97969 1.23468 1.10594 1.06303 0.98719 0.92784 0.94077 0.94044 0.84684 0.81513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.65 14 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 14 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 14 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 14 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 14 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 14 7 C -0.51 -14.62 9.09 -34.44 -0.31 -14.94 14 8 H 0.06 1.68 7.74 -52.49 -0.41 1.27 14 9 C 0.08 2.27 5.54 -29.04 -0.16 2.11 14 10 C 0.17 4.10 6.41 -82.19 -0.53 3.57 14 11 N -0.27 -6.09 12.60 33.81 0.43 -5.67 14 12 N -0.49 -8.94 7.50 32.24 0.24 -8.70 14 13 H 0.43 5.91 8.96 -182.86 -1.64 4.27 14 14 C 0.08 1.38 7.76 -84.23 -0.65 0.72 14 15 C -0.13 -1.78 10.17 -40.80 -0.41 -2.20 14 16 C -0.19 -2.56 11.12 28.82 0.32 -2.24 14 17 S 0.16 2.73 23.31 -107.50 -2.51 0.23 14 18 C -0.27 -5.58 7.22 -38.66 -0.28 -5.86 14 19 H 0.26 7.28 8.31 -40.82 -0.34 6.94 14 20 H 0.04 1.16 8.14 -51.93 -0.42 0.74 14 21 H 0.04 1.13 8.14 -51.93 -0.42 0.71 14 22 H 0.14 1.43 8.06 -52.49 -0.42 1.01 14 23 H 0.17 1.54 8.06 -52.49 -0.42 1.12 14 LS Contribution 227.73 15.07 3.43 3.43 Total: -1.00 -31.87 227.73 -7.69 -39.56 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -2.87 Total: -2.84 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -2.12 Total: -17.20 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 1.40 Total: -40.01 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -2.51 Total: 0.23 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -31.87 -7.69 -39.56 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889165.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.929 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds