Wall clock time and date at job start Mon Mar 30 2020 02:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35400 * 126.52089 * 2 1 4 4 N 1.30823 * 108.78950 * 179.97438 * 3 2 1 5 5 C 1.33375 * 109.13673 * 359.97438 * 4 3 2 6 6 C 1.35251 * 107.94204 * 0.08677 * 5 4 3 7 7 C 1.50692 * 123.49395 * 179.88487 * 6 5 4 8 8 C 1.53549 * 107.83625 * 344.26648 * 7 6 5 9 9 N 1.46948 * 109.58875 * 48.89909 * 8 7 6 10 10 C 1.47279 * 111.50858 * 288.72809 * 9 8 7 11 11 H 1.09002 * 109.69519 * 291.69453 * 10 9 8 12 12 C 1.50702 * 109.69821 * 171.13841 * 10 9 8 13 13 H 1.07997 * 120.00218 * 240.55667 * 12 10 9 14 14 C 1.37880 * 119.99811 * 60.55911 * 12 10 9 15 15 N 1.31510 * 119.99835 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 119.99851 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47174 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47152 * 119.99542 * 16 14 12 19 19 H 1.48496 * 109.47438 * 239.99963 * 16 14 12 20 20 H 1.08994 * 109.46963 * 269.99699 * 1 2 3 21 21 H 1.08997 * 109.46897 * 30.00729 * 1 2 3 22 22 H 1.09002 * 109.46754 * 150.00049 * 1 2 3 23 23 H 1.08000 * 125.59808 * 359.97438 * 3 2 1 24 24 H 1.08996 * 109.79072 * 224.68187 * 7 6 5 25 25 H 1.09004 * 109.78845 * 103.84710 * 7 6 5 26 26 H 1.09004 * 109.45327 * 288.86583 * 8 7 6 27 27 H 1.09005 * 109.45301 * 168.93524 * 8 7 6 28 28 H 1.00908 * 110.99657 * 53.04390 * 9 8 7 29 29 H 0.97007 * 119.99764 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2708 1.0881 0.0000 4 7 3.5169 0.6897 0.0006 5 6 3.5496 -0.6436 0.0015 6 6 2.2735 -1.0917 -0.0004 7 6 1.9052 -2.5529 -0.0026 8 6 3.1549 -3.3524 -0.3987 9 7 4.3011 -2.9046 0.4045 10 6 4.7481 -1.5595 0.0047 11 1 5.1833 -1.5986 -0.9938 12 6 5.7732 -1.0523 0.9861 13 1 5.5833 -0.1492 1.5471 14 6 6.9537 -1.7412 1.1676 15 7 7.1848 -2.8411 0.4847 16 14 8.2247 -1.1122 2.3834 17 1 7.7276 0.1348 3.0184 18 1 8.4611 -2.1402 3.4286 19 1 9.4959 -0.8306 1.6694 20 1 -0.3633 -0.0001 1.0276 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3633 -0.8900 -0.5138 23 1 1.9392 2.1160 -0.0004 24 1 1.1087 -2.7317 -0.7249 25 1 1.5759 -2.8520 0.9925 26 1 3.3680 -3.1929 -1.4557 27 1 2.9789 -4.4132 -0.2202 28 1 4.0865 -2.9363 1.3900 29 1 8.0155 -3.3256 0.6121 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259900829.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:33 Heat of formation + Delta-G solvation = 69.416029 kcal Electronic energy + Delta-G solvation = -13649.137006 eV Core-core repulsion = 11380.342709 eV Total energy + Delta-G solvation = -2268.794296 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.55304 -36.31018 -33.74179 -32.42410 -29.72633 -28.43015 -26.67864 -25.03731 -22.15515 -21.89902 -19.95823 -18.48083 -16.54226 -16.12272 -15.29336 -14.38097 -14.32910 -13.76342 -13.63429 -12.98219 -12.76850 -12.51042 -12.25904 -11.93762 -11.38839 -11.30877 -10.76330 -10.52502 -10.34342 -9.76939 -9.29078 -8.91922 -8.70019 -8.32212 -7.32158 -6.97015 -5.76234 -3.86535 2.63406 3.25961 3.43213 3.50733 3.57447 4.01792 4.62188 4.84015 5.15301 5.15910 5.23217 5.35437 5.37810 5.61499 5.70950 5.95015 6.02422 6.19954 6.38944 6.58249 6.68676 6.99827 7.53669 7.59536 7.85486 8.09528 8.30257 8.57579 8.92457 9.07979 9.25227 9.79721 11.28594 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.043614 B = 0.010840 C = 0.009140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.839313 B = 2582.423517 C = 3062.733238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.461 5.461 3 C 0.143 3.857 4 N -0.465 5.465 5 C 0.023 3.977 6 C -0.069 4.069 7 C -0.071 4.071 8 C 0.060 3.940 9 N -0.645 5.645 10 C 0.292 3.708 11 H 0.053 0.947 12 C -0.514 4.514 13 H 0.061 0.939 14 C 0.077 3.923 15 N -0.855 5.855 16 Si 0.886 3.114 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.285 1.285 20 H 0.068 0.932 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.195 0.805 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.328 0.672 29 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.405 1.969 -0.971 13.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.146 5.146 3 C -0.137 4.137 4 N -0.183 5.183 5 C -0.110 4.110 6 C -0.182 4.182 7 C -0.112 4.112 8 C -0.072 4.072 9 N -0.273 5.273 10 C 0.184 3.816 11 H 0.070 0.930 12 C -0.554 4.554 13 H 0.079 0.921 14 C -0.129 4.129 15 N -0.491 5.491 16 Si 0.714 3.286 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.212 1.212 20 H 0.087 0.913 21 H 0.099 0.901 22 H 0.096 0.904 23 H 0.211 0.789 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.146 0.854 29 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.257 2.004 -1.411 12.500 hybrid contribution -1.071 0.564 1.054 1.605 sum -13.328 2.569 -0.357 13.578 Atomic orbital electron populations 1.21839 0.78154 1.03724 1.02707 1.44863 1.06453 1.07056 1.56212 1.25036 0.86083 0.92810 1.09723 1.70007 1.17819 1.12851 1.17607 1.22616 0.95455 0.90779 1.02129 1.21006 0.91634 0.89960 1.15559 1.20920 1.00819 0.88610 1.00812 1.22105 0.88329 0.97271 0.99455 1.61155 1.30812 1.28349 1.06950 1.17780 0.85928 0.79841 0.98045 0.92975 1.20949 1.00499 1.09744 1.24183 0.92076 1.24994 0.97603 0.94655 0.95611 1.70124 1.23896 1.15522 1.39566 0.86651 0.81723 0.78836 0.81406 1.19885 1.21244 1.21161 0.91348 0.90132 0.90399 0.78877 0.92411 0.91812 0.91849 0.91620 0.85425 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 11.08 59.85 0.66 1.50 15 2 N -0.46 -7.74 3.14 -121.30 -0.38 -8.12 15 3 C 0.14 2.62 12.58 -89.78 -1.13 1.49 15 4 N -0.47 -11.00 11.13 -10.71 -0.12 -11.12 15 5 C 0.02 0.56 6.35 -82.92 -0.53 0.04 15 6 C -0.07 -1.37 6.80 -81.88 -0.56 -1.93 15 7 C -0.07 -1.19 6.17 -27.60 -0.17 -1.36 15 8 C 0.06 1.15 6.55 -3.51 -0.02 1.13 15 9 N -0.65 -15.52 5.94 -108.49 -0.64 -16.17 15 10 C 0.29 7.82 2.70 -69.74 -0.19 7.64 15 11 H 0.05 1.56 8.14 -51.93 -0.42 1.13 15 12 C -0.51 -14.98 8.56 -34.44 -0.29 -15.27 15 13 H 0.06 1.85 7.70 -52.49 -0.40 1.45 15 14 C 0.08 2.21 5.39 -17.82 -0.10 2.11 15 15 N -0.86 -25.28 12.80 55.43 0.71 -24.57 15 16 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 15 17 H -0.27 -6.88 7.11 56.52 0.40 -6.48 15 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 15 19 H -0.29 -7.08 7.11 56.52 0.40 -6.67 15 20 H 0.07 0.65 8.14 -51.93 -0.42 0.22 15 21 H 0.08 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.08 0.74 7.91 -51.93 -0.41 0.33 15 23 H 0.19 2.61 8.06 -52.49 -0.42 2.19 15 24 H 0.06 0.82 8.02 -51.93 -0.42 0.40 15 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 26 H 0.06 1.25 8.07 -51.93 -0.42 0.83 15 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 28 H 0.33 7.90 8.57 -39.29 -0.34 7.56 15 29 H 0.25 7.16 8.31 -40.82 -0.34 6.83 15 LS Contribution 247.40 15.07 3.73 3.73 Total: -1.00 -33.44 247.40 -7.71 -41.15 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -3.66 Total: 2.66 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -2.32 Total: -4.66 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.43 Total: -59.98 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -33.44 -7.71 -41.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259900829.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.562 kcal (2) G-P(sol) polarization free energy of solvation -33.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds