Wall clock time and date at job start Mon Mar 30 2020 02:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35394 * 126.51853 * 2 1 4 4 N 1.30839 * 108.78744 * 180.02562 * 3 2 1 5 5 C 1.33366 * 109.13587 * 0.02562 * 4 3 2 6 6 C 1.35254 * 107.94135 * 359.93044 * 5 4 3 7 7 C 1.50699 * 123.49305 * 180.13138 * 6 5 4 8 8 C 1.53546 * 107.83531 * 15.74006 * 7 6 5 9 9 N 1.46980 * 109.61559 * 311.09769 * 8 7 6 10 10 C 1.47274 * 111.49448 * 71.22228 * 9 8 7 11 11 H 1.09006 * 109.69497 * 68.39035 * 10 9 8 12 12 C 1.50706 * 109.69574 * 188.93960 * 10 9 8 13 13 H 1.08005 * 119.99758 * 119.44801 * 12 10 9 14 14 C 1.37871 * 120.00102 * 299.44685 * 12 10 9 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 H 1.09002 * 109.46980 * 269.97784 * 1 2 3 21 21 H 1.08995 * 109.46830 * 29.97740 * 1 2 3 22 22 H 1.09001 * 109.46868 * 149.98037 * 1 2 3 23 23 H 1.08000 * 125.60719 * 0.08059 * 3 2 1 24 24 H 1.09005 * 109.79060 * 135.32261 * 7 6 5 25 25 H 1.09001 * 109.79051 * 256.15260 * 7 6 5 26 26 H 1.08998 * 109.45913 * 71.12740 * 8 7 6 27 27 H 1.09007 * 109.45460 * 191.08071 * 8 7 6 28 28 H 1.00903 * 110.97996 * 306.92648 * 9 8 7 29 29 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2707 1.0881 0.0000 4 7 3.5169 0.6896 -0.0006 5 6 3.5496 -0.6436 -0.0015 6 6 2.2735 -1.0917 0.0001 7 6 1.9051 -2.5530 0.0025 8 6 3.1547 -3.3522 0.3994 9 7 4.3019 -2.9051 -0.4033 10 6 4.7480 -1.5595 -0.0043 11 1 5.1834 -1.5978 0.9943 12 6 5.7727 -1.0522 -0.9860 13 1 5.5821 -0.1495 -1.5475 14 6 6.9535 -1.7404 -1.1674 15 7 7.1855 -2.8399 -0.4840 16 14 8.2233 -1.1119 -2.3848 17 1 9.3952 -2.0240 -2.3928 18 1 7.6249 -1.0622 -3.7429 19 1 8.6597 0.2503 -1.9859 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5141 23 1 1.9392 2.1160 0.0012 24 1 1.1082 -2.7315 0.7245 25 1 1.5762 -2.8523 -0.9927 26 1 3.3674 -3.1924 1.4564 27 1 2.9789 -4.4131 0.2209 28 1 4.0880 -2.9377 -1.3888 29 1 6.5259 -3.1664 0.1479 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259900831.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:35 Heat of formation + Delta-G solvation = 39.348923 kcal Electronic energy + Delta-G solvation = -13694.316587 eV Core-core repulsion = 11424.218483 eV Total energy + Delta-G solvation = -2270.098104 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.13220 -38.27944 -35.30760 -34.52951 -31.31445 -30.16662 -27.91620 -26.61962 -24.04720 -23.62956 -21.65186 -20.21504 -18.93960 -17.59630 -16.76277 -16.24082 -15.69519 -15.53063 -15.21039 -14.81448 -14.39134 -14.05209 -13.60681 -13.38642 -13.22085 -12.91662 -12.56099 -12.44313 -12.03776 -11.86546 -10.94737 -10.54938 -10.41959 -10.29673 -9.21194 -8.98823 -8.34588 -6.18796 1.10864 1.56447 1.65273 1.85534 1.96348 2.28742 2.67471 3.27680 3.71186 3.72794 3.88366 4.01016 4.13514 4.25070 4.40816 4.50275 4.57120 4.65634 4.80619 4.92665 4.99290 5.22837 5.44812 5.82401 6.05650 6.22333 6.45750 6.57996 6.76574 6.94321 7.37074 7.67778 8.99548 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.043478 B = 0.010910 C = 0.009189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.847587 B = 2565.810929 C = 3046.331062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.451 5.451 3 C 0.156 3.844 4 N -0.528 5.528 5 C -0.032 4.032 6 C -0.055 4.055 7 C -0.058 4.058 8 C 0.056 3.944 9 N -0.680 5.680 10 C 0.283 3.717 11 H -0.007 1.007 12 C -0.607 4.607 13 H 0.030 0.970 14 C -0.013 4.013 15 N -0.919 5.919 16 Si 1.114 2.886 17 H -0.280 1.280 18 H -0.275 1.275 19 H -0.282 1.282 20 H 0.090 0.910 21 H 0.111 0.889 22 H 0.093 0.907 23 H 0.241 0.759 24 H 0.100 0.900 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.099 0.901 28 H 0.331 0.669 29 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.720 2.599 0.156 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.134 5.134 3 C -0.125 4.125 4 N -0.247 5.247 5 C -0.164 4.164 6 C -0.171 4.171 7 C -0.098 4.098 8 C -0.074 4.074 9 N -0.309 5.309 10 C 0.174 3.826 11 H 0.011 0.989 12 C -0.646 4.646 13 H 0.048 0.952 14 C -0.216 4.216 15 N -0.555 5.555 16 Si 0.937 3.063 17 H -0.205 1.205 18 H -0.201 1.201 19 H -0.208 1.208 20 H 0.109 0.891 21 H 0.130 0.870 22 H 0.112 0.888 23 H 0.257 0.743 24 H 0.118 0.882 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.117 0.883 28 H 0.148 0.852 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.277 2.452 -0.056 14.486 hybrid contribution -2.666 0.643 0.521 2.792 sum -16.943 3.096 0.464 17.230 Atomic orbital electron populations 1.22345 0.73674 1.06238 1.04884 1.45139 1.08885 1.05306 1.54054 1.25818 0.84775 0.94928 1.06938 1.69821 1.21588 1.13094 1.20148 1.21908 0.95930 0.91314 1.07272 1.21249 0.90713 0.92098 1.13023 1.20830 1.00140 0.85755 1.03098 1.22194 0.88034 0.99424 0.97732 1.61041 1.34932 1.26886 1.08011 1.17379 0.88325 0.82660 0.94223 0.98911 1.21951 1.04263 1.11489 1.26868 0.95195 1.27035 1.00022 0.94311 1.00232 1.70688 1.38905 1.21322 1.24536 0.82983 0.73934 0.75216 0.74168 1.20490 1.20053 1.20813 0.89130 0.87015 0.88828 0.74256 0.88204 0.89736 0.93009 0.88292 0.85152 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 11.08 127.77 1.42 2.50 15 2 N -0.45 -13.63 3.14 -537.67 -1.69 -15.31 15 3 C 0.16 5.42 12.58 180.05 2.27 7.68 15 4 N -0.53 -25.61 11.13 -187.79 -2.09 -27.70 15 5 C -0.03 -1.61 6.35 41.68 0.26 -1.34 15 6 C -0.05 -2.09 6.80 41.25 0.28 -1.81 15 7 C -0.06 -1.75 6.17 30.03 0.19 -1.56 15 8 C 0.06 2.06 6.55 86.47 0.57 2.63 15 9 N -0.68 -33.03 5.21 -497.10 -2.59 -35.62 15 10 C 0.28 15.95 2.30 43.39 0.10 16.05 15 11 H -0.01 -0.43 8.01 -2.38 -0.02 -0.45 15 12 C -0.61 -37.64 8.55 25.60 0.22 -37.42 15 13 H 0.03 1.94 7.70 -2.91 -0.02 1.91 15 14 C -0.01 -0.80 5.39 84.65 0.46 -0.34 15 15 N -0.92 -58.39 13.52 21.45 0.29 -58.10 15 16 Si 1.11 54.11 29.90 68.60 2.05 56.16 15 17 H -0.28 -13.25 7.11 99.48 0.71 -12.54 15 18 H -0.27 -12.52 7.11 99.48 0.71 -11.81 15 19 H -0.28 -13.22 7.11 99.48 0.71 -12.51 15 20 H 0.09 1.12 8.14 -2.39 -0.02 1.10 15 21 H 0.11 1.15 8.14 -2.39 -0.02 1.13 15 22 H 0.09 1.25 8.04 -2.39 -0.02 1.23 15 23 H 0.24 5.61 8.06 -2.91 -0.02 5.59 15 24 H 0.10 2.29 8.14 -2.38 -0.02 2.27 15 25 H 0.08 2.29 8.14 -2.39 -0.02 2.27 15 26 H 0.05 1.99 8.07 -2.39 -0.02 1.97 15 27 H 0.10 3.00 8.14 -2.38 -0.02 2.98 15 28 H 0.33 16.19 8.57 -89.69 -0.77 15.42 15 29 H 0.28 17.80 6.43 -92.71 -0.60 17.21 15 Total: -1.00 -80.72 245.58 2.28 -78.44 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.56 Total: 15.77 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 5.75 Total: -13.63 kcal Atomic # 7 Polarization: -130.66 SS G_CDS: -6.08 Total: -136.74 kcal Atomic # 14 Polarization: 54.11 SS G_CDS: 2.05 Total: 56.16 kcal Total: -80.72 2.28 -78.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259900831.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.793 kcal (2) G-P(sol) polarization free energy of solvation -80.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds