Wall clock time and date at job start Mon Mar 30 2020 02:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47540 * 2 1 4 4 C 1.53006 * 109.47279 * 119.99941 * 2 1 3 5 5 H 1.08994 * 109.46806 * 300.63979 * 4 2 1 6 6 C 1.50694 * 109.46705 * 60.63842 * 4 2 1 7 7 H 1.08009 * 120.00093 * 115.78624 * 6 4 2 8 8 C 1.37878 * 120.00557 * 295.78047 * 6 4 2 9 9 N 1.31510 * 119.99686 * 337.73507 * 8 6 4 10 10 Si 1.86803 * 120.00355 * 157.72522 * 8 6 4 11 11 H 1.48505 * 109.46573 * 90.00485 * 10 8 6 12 12 H 1.48494 * 109.47301 * 210.00709 * 10 8 6 13 13 H 1.48497 * 109.47072 * 330.00648 * 10 8 6 14 14 C 1.50698 * 109.47165 * 180.63922 * 4 2 1 15 15 C 1.34850 * 125.89383 * 325.19817 * 14 4 2 16 16 C 1.40891 * 107.41753 * 180.25497 * 15 14 4 17 17 C 1.34848 * 107.41644 * 359.73678 * 16 15 14 18 18 N 1.36339 * 108.21778 * 359.97438 * 17 16 15 19 19 C 1.46499 * 125.63488 * 179.97438 * 18 17 16 20 20 H 1.09005 * 109.47375 * 292.70369 * 1 2 3 21 21 H 1.09002 * 109.47372 * 52.70175 * 1 2 3 22 22 H 1.08998 * 109.47271 * 172.70653 * 1 2 3 23 23 H 1.08995 * 109.47157 * 239.99864 * 2 1 3 24 24 H 1.09000 * 109.47539 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.46913 * 300.00211 * 3 2 1 26 26 H 1.09004 * 109.47227 * 59.99894 * 3 2 1 27 27 H 0.97003 * 120.00082 * 179.97438 * 9 8 6 28 28 H 1.08004 * 126.28915 * 359.97438 * 15 14 4 29 29 H 1.08000 * 126.28887 * 179.73673 * 16 15 14 30 30 H 1.08005 * 125.88751 * 180.02562 * 17 16 15 31 31 H 1.09004 * 109.47089 * 90.02271 * 19 18 17 32 32 H 1.09009 * 109.47053 * 330.02618 * 19 18 17 33 33 H 1.08997 * 109.47305 * 210.03164 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6673 -0.2141 2.1392 6 6 1.5506 -2.1465 1.2413 7 1 2.2579 -2.9600 1.1732 8 6 0.2000 -2.4122 1.3211 9 7 -0.6172 -1.5170 1.8313 10 14 -0.4690 -4.0436 0.7043 11 1 -0.4618 -5.0322 1.8125 12 1 -1.8592 -3.8561 0.2172 13 1 0.3822 -4.5394 -0.4069 14 6 3.5469 -0.7075 1.2572 15 6 4.3440 -0.7877 0.1725 16 6 5.6776 -0.7458 0.6250 17 6 5.6446 -0.6357 1.9686 18 7 4.3395 -0.6075 2.3620 19 6 3.8669 -0.4962 3.7442 20 1 -0.3634 0.3967 0.9481 21 1 -0.3634 0.6227 -0.8175 22 1 -0.3634 -1.0193 -0.1305 23 1 1.8933 -0.5138 -0.8899 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 -1.5674 -1.7038 1.8871 28 1 4.0197 -0.8734 -0.8542 29 1 6.5634 -0.7931 0.0090 30 1 6.5038 -0.5787 2.6205 31 1 3.7462 0.5557 4.0034 32 1 4.5939 -0.9545 4.4148 33 1 2.9091 -1.0070 3.8431 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259949065.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:43 Heat of formation + Delta-G solvation = 50.776685 kcal Electronic energy + Delta-G solvation = -14131.954781 eV Core-core repulsion = 11965.892566 eV Total energy + Delta-G solvation = -2166.062215 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.36103 -35.92434 -32.18918 -31.79419 -29.33300 -26.32496 -25.62393 -25.38243 -22.80090 -20.08312 -18.96327 -17.87242 -16.32409 -16.11522 -14.46959 -14.39114 -13.62214 -13.15070 -12.95811 -12.56432 -12.38318 -11.85709 -11.73406 -11.37306 -11.21929 -11.19746 -10.88285 -10.66131 -10.56487 -10.04238 -9.99172 -9.48978 -9.15172 -9.14042 -7.85565 -7.74377 -6.96016 -6.08869 -3.98586 3.18301 3.28306 3.37373 3.45502 3.84170 3.97048 4.45118 5.16385 5.44515 5.71180 5.77361 6.06981 6.10013 6.23561 6.26884 6.35279 6.47949 6.57267 6.82075 6.93931 7.02995 7.10736 7.15821 7.31648 7.45828 7.50722 7.74244 7.91114 8.04487 8.08879 8.22874 8.30099 8.45415 8.95824 9.54680 10.93707 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.031484 B = 0.012394 C = 0.010995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.125564 B = 2258.590333 C = 2545.959719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.071 4.071 3 C -0.146 4.146 4 C 0.108 3.892 5 H 0.038 0.962 6 C -0.516 4.516 7 H 0.056 0.944 8 C 0.074 3.926 9 N -0.867 5.867 10 Si 0.874 3.126 11 H -0.282 1.282 12 H -0.284 1.284 13 H -0.271 1.271 14 C 0.087 3.913 15 C -0.228 4.228 16 C -0.203 4.203 17 C -0.056 4.056 18 N -0.451 5.451 19 C 0.077 3.923 20 H 0.070 0.930 21 H -0.003 1.003 22 H 0.068 0.932 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.034 0.966 26 H 0.040 0.960 27 H 0.261 0.739 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.146 0.854 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.678 3.044 0.961 6.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.091 4.091 3 C -0.204 4.204 4 C 0.089 3.911 5 H 0.056 0.944 6 C -0.554 4.554 7 H 0.075 0.925 8 C -0.128 4.128 9 N -0.505 5.505 10 Si 0.700 3.300 11 H -0.209 1.209 12 H -0.210 1.210 13 H -0.196 1.196 14 C -0.025 4.025 15 C -0.251 4.251 16 C -0.228 4.228 17 C -0.184 4.184 18 N -0.127 5.127 19 C -0.066 4.066 20 H 0.089 0.911 21 H 0.015 0.985 22 H 0.087 0.913 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.142 0.858 29 H 0.138 0.862 30 H 0.163 0.837 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.379 3.116 1.381 6.368 hybrid contribution -0.287 -0.921 -0.317 1.016 sum 5.091 2.195 1.064 5.646 Atomic orbital electron populations 1.22213 0.94653 1.01599 0.99127 1.21173 0.96269 0.92803 0.98813 1.21959 1.00571 0.98282 0.99561 1.17522 0.82106 0.96570 0.94913 0.94371 1.20908 0.91588 0.91125 1.51819 0.92525 1.24759 0.97016 0.96301 0.94722 1.70249 1.04191 1.35100 1.40917 0.86906 0.78348 0.84821 0.79880 1.20858 1.21001 1.19622 1.21290 0.95160 1.01545 0.84516 1.20475 0.92079 1.14746 0.97803 1.20711 0.97086 1.11356 0.93695 1.21441 0.85962 1.15118 0.95829 1.43920 1.05708 1.56741 1.06335 1.21880 1.02018 1.02017 0.80643 0.91136 0.98458 0.91287 0.93210 0.93177 0.94699 0.94092 0.92870 0.85785 0.86167 0.83688 0.92128 0.91268 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.80 7.36 37.15 0.27 -2.53 16 2 C -0.07 -1.63 2.12 -90.62 -0.19 -1.82 16 3 C -0.15 -2.95 8.90 37.16 0.33 -2.62 16 4 C 0.11 2.64 1.53 -92.92 -0.14 2.50 16 5 H 0.04 1.00 7.36 -51.93 -0.38 0.62 16 6 C -0.52 -13.84 8.39 -34.44 -0.29 -14.13 16 7 H 0.06 1.59 7.84 -52.48 -0.41 1.18 16 8 C 0.07 1.97 3.27 -17.82 -0.06 1.91 16 9 N -0.87 -23.10 9.59 55.43 0.53 -22.57 16 10 Si 0.87 20.67 29.54 -169.99 -5.02 15.64 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 C 0.09 1.97 4.86 -81.79 -0.40 1.58 16 15 C -0.23 -4.94 8.99 -39.78 -0.36 -5.29 16 16 C -0.20 -3.90 10.86 -39.78 -0.43 -4.33 16 17 C -0.06 -1.02 11.43 -16.75 -0.19 -1.21 16 18 N -0.45 -9.03 3.15 -119.90 -0.38 -9.41 16 19 C 0.08 1.27 10.71 59.85 0.64 1.91 16 20 H 0.07 1.76 6.84 -51.93 -0.36 1.40 16 21 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 22 H 0.07 1.76 5.04 -51.93 -0.26 1.49 16 23 H 0.05 1.16 7.29 -51.93 -0.38 0.78 16 24 H 0.05 1.00 6.43 -51.93 -0.33 0.67 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 28 H 0.12 2.64 7.37 -52.48 -0.39 2.25 16 29 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 30 H 0.15 2.13 8.06 -52.48 -0.42 1.71 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.09 1.74 7.50 -51.93 -0.39 1.35 16 LS Contribution 262.83 15.07 3.96 3.96 Total: -1.00 -27.87 262.83 -6.71 -34.58 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -4.99 Total: 1.84 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -0.82 Total: -24.05 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 0.15 Total: -31.98 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.87 -6.71 -34.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259949065.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.356 kcal (2) G-P(sol) polarization free energy of solvation -27.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds