Wall clock time and date at job start Mon Mar 30 2020 02:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47540 * 2 1 4 4 C 1.53006 * 109.47279 * 119.99941 * 2 1 3 5 5 H 1.08994 * 109.46806 * 300.63979 * 4 2 1 6 6 C 1.50694 * 109.46705 * 60.63842 * 4 2 1 7 7 H 1.08009 * 120.00093 * 115.78624 * 6 4 2 8 8 C 1.37878 * 120.00557 * 295.78047 * 6 4 2 9 9 N 1.31510 * 119.99686 * 337.73507 * 8 6 4 10 10 Si 1.86803 * 120.00355 * 157.72522 * 8 6 4 11 11 H 1.48505 * 109.46573 * 90.00485 * 10 8 6 12 12 H 1.48494 * 109.47301 * 210.00709 * 10 8 6 13 13 H 1.48497 * 109.47072 * 330.00648 * 10 8 6 14 14 C 1.50698 * 109.47165 * 180.63922 * 4 2 1 15 15 C 1.34850 * 125.89383 * 325.19817 * 14 4 2 16 16 C 1.40891 * 107.41753 * 180.25497 * 15 14 4 17 17 C 1.34848 * 107.41644 * 359.73678 * 16 15 14 18 18 N 1.36339 * 108.21778 * 359.97438 * 17 16 15 19 19 C 1.46499 * 125.63488 * 179.97438 * 18 17 16 20 20 H 1.09005 * 109.47375 * 292.70369 * 1 2 3 21 21 H 1.09002 * 109.47372 * 52.70175 * 1 2 3 22 22 H 1.08998 * 109.47271 * 172.70653 * 1 2 3 23 23 H 1.08995 * 109.47157 * 239.99864 * 2 1 3 24 24 H 1.09000 * 109.47539 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.46913 * 300.00211 * 3 2 1 26 26 H 1.09004 * 109.47227 * 59.99894 * 3 2 1 27 27 H 0.97003 * 120.00082 * 179.97438 * 9 8 6 28 28 H 1.08004 * 126.28915 * 359.97438 * 15 14 4 29 29 H 1.08000 * 126.28887 * 179.73673 * 16 15 14 30 30 H 1.08005 * 125.88751 * 180.02562 * 17 16 15 31 31 H 1.09004 * 109.47089 * 90.02271 * 19 18 17 32 32 H 1.09009 * 109.47053 * 330.02618 * 19 18 17 33 33 H 1.08997 * 109.47305 * 210.03164 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6673 -0.2141 2.1392 6 6 1.5506 -2.1465 1.2413 7 1 2.2579 -2.9600 1.1732 8 6 0.2000 -2.4122 1.3211 9 7 -0.6172 -1.5170 1.8313 10 14 -0.4690 -4.0436 0.7043 11 1 -0.4618 -5.0322 1.8125 12 1 -1.8592 -3.8561 0.2172 13 1 0.3822 -4.5394 -0.4069 14 6 3.5469 -0.7075 1.2572 15 6 4.3440 -0.7877 0.1725 16 6 5.6776 -0.7458 0.6250 17 6 5.6446 -0.6357 1.9686 18 7 4.3395 -0.6075 2.3620 19 6 3.8669 -0.4962 3.7442 20 1 -0.3634 0.3967 0.9481 21 1 -0.3634 0.6227 -0.8175 22 1 -0.3634 -1.0193 -0.1305 23 1 1.8933 -0.5138 -0.8899 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 -1.5674 -1.7038 1.8871 28 1 4.0197 -0.8734 -0.8542 29 1 6.5634 -0.7931 0.0090 30 1 6.5038 -0.5787 2.6205 31 1 3.7462 0.5557 4.0034 32 1 4.5939 -0.9545 4.4148 33 1 2.9091 -1.0070 3.8431 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259949065.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:42 Heat of formation + Delta-G solvation = 36.771950 kcal Electronic energy + Delta-G solvation = -14132.562072 eV Core-core repulsion = 11965.892566 eV Total energy + Delta-G solvation = -2166.669506 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.90917 -37.77754 -34.02640 -33.39146 -31.08837 -28.13106 -27.23434 -26.97082 -24.69613 -21.73555 -20.55661 -19.58146 -18.31196 -17.71246 -16.38778 -15.88888 -15.35225 -14.83618 -14.73455 -14.28045 -13.84938 -13.66501 -13.29995 -12.91820 -12.85328 -12.73679 -12.69068 -12.54344 -12.40266 -11.94722 -11.87118 -11.33623 -11.05103 -11.02701 -9.87935 -9.26278 -8.59988 -8.09170 -6.07331 1.37092 1.43002 1.52175 1.68136 2.33584 2.40389 2.50405 3.10943 4.16434 4.27998 4.46063 4.50420 4.51937 4.55165 4.75272 4.82643 4.91937 4.94775 5.06771 5.19724 5.25191 5.32419 5.47634 5.51526 5.65076 5.75213 5.88239 5.91584 6.13529 6.35294 6.46573 6.66987 6.83849 6.88419 7.47881 8.89420 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.031484 B = 0.012394 C = 0.010995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.125564 B = 2258.590333 C = 2545.959719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.072 4.072 3 C -0.133 4.133 4 C 0.117 3.883 5 H 0.010 0.990 6 C -0.536 4.536 7 H 0.035 0.965 8 C 0.045 3.955 9 N -0.882 5.882 10 Si 0.924 3.076 11 H -0.279 1.279 12 H -0.277 1.277 13 H -0.276 1.276 14 C 0.052 3.948 15 C -0.239 4.239 16 C -0.218 4.218 17 C -0.039 4.039 18 N -0.459 5.459 19 C 0.075 3.925 20 H 0.053 0.947 21 H 0.018 0.982 22 H 0.047 0.953 23 H 0.041 0.959 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.038 0.962 27 H 0.263 0.737 28 H 0.117 0.883 29 H 0.147 0.853 30 H 0.189 0.811 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.923 3.361 1.086 7.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.091 4.091 3 C -0.191 4.191 4 C 0.098 3.902 5 H 0.028 0.972 6 C -0.574 4.574 7 H 0.053 0.947 8 C -0.157 4.157 9 N -0.519 5.519 10 Si 0.750 3.250 11 H -0.205 1.205 12 H -0.202 1.202 13 H -0.201 1.201 14 C -0.060 4.060 15 C -0.263 4.263 16 C -0.243 4.243 17 C -0.167 4.167 18 N -0.135 5.135 19 C -0.067 4.067 20 H 0.072 0.928 21 H 0.037 0.963 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.135 0.865 29 H 0.165 0.835 30 H 0.206 0.794 31 H 0.096 0.904 32 H 0.123 0.877 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.617 3.436 1.515 7.608 hybrid contribution -0.636 -1.025 -0.321 1.248 sum 5.981 2.411 1.195 6.558 Atomic orbital electron populations 1.22029 0.95201 1.00476 0.98934 1.21106 0.95737 0.94492 0.97771 1.21800 1.00503 0.96323 1.00436 1.17277 0.83856 0.94921 0.94171 0.97159 1.21028 0.91704 0.91989 1.52685 0.94678 1.25244 0.97073 0.98837 0.94531 1.70317 1.04316 1.36255 1.41006 0.86123 0.77911 0.81850 0.79166 1.20545 1.20183 1.20121 1.21040 0.94443 1.04464 0.86102 1.20620 0.93567 1.14716 0.97368 1.21041 0.96795 1.11824 0.94640 1.22144 0.86202 1.12142 0.96258 1.44181 1.06223 1.56262 1.06856 1.22028 1.01666 1.03182 0.79804 0.92834 0.96344 0.93454 0.94069 0.93097 0.92622 0.94279 0.92685 0.86539 0.83541 0.79419 0.90425 0.87653 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.17 7.36 71.98 0.53 -4.64 16 2 C -0.07 -3.31 2.12 -10.79 -0.02 -3.34 16 3 C -0.13 -5.26 8.90 71.98 0.64 -4.62 16 4 C 0.12 5.84 1.53 -12.29 -0.02 5.82 16 5 H 0.01 0.56 7.36 -2.39 -0.02 0.55 16 6 C -0.54 -29.52 8.39 25.60 0.21 -29.30 16 7 H 0.03 2.03 7.84 -2.91 -0.02 2.01 16 8 C 0.04 2.39 3.27 84.66 0.28 2.67 16 9 N -0.88 -47.69 9.59 21.45 0.21 -47.49 16 10 Si 0.92 42.83 29.54 68.60 2.03 44.86 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 C 0.05 2.36 4.86 41.08 0.20 2.56 16 15 C -0.24 -10.23 8.99 22.14 0.20 -10.03 16 16 C -0.22 -7.88 10.86 22.14 0.24 -7.64 16 17 C -0.04 -1.31 11.43 83.21 0.95 -0.36 16 18 N -0.46 -17.74 3.15 -533.24 -1.68 -19.42 16 19 C 0.07 2.37 10.71 127.77 1.37 3.74 16 20 H 0.05 2.70 6.84 -2.38 -0.02 2.68 16 21 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.05 2.42 5.04 -2.39 -0.01 2.41 16 23 H 0.04 1.95 7.29 -2.39 -0.02 1.93 16 24 H 0.05 1.99 6.43 -2.39 -0.02 1.97 16 25 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.26 13.60 8.31 -92.71 -0.77 12.82 16 28 H 0.12 5.01 7.37 -2.91 -0.02 4.98 16 29 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 30 H 0.19 4.56 8.06 -2.91 -0.02 4.53 16 31 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 33 H 0.06 2.43 7.50 -2.39 -0.02 2.41 16 Total: -1.00 -59.89 262.83 6.20 -53.69 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 1.07 Total: 13.51 kcal Atomic # 6 Polarization: -49.73 SS G_CDS: 4.58 Total: -45.15 kcal Atomic # 7 Polarization: -65.44 SS G_CDS: -1.47 Total: -66.91 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -59.89 6.20 -53.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259949065.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.465 kcal (2) G-P(sol) polarization free energy of solvation -59.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds