Wall clock time and date at job start Mon Mar 30 2020 02:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30675 * 123.22659 * 2 1 4 4 C 1.29524 * 117.63418 * 180.02562 * 3 2 1 5 5 C 1.50696 * 124.56205 * 179.97438 * 4 3 2 6 6 C 1.47196 * 109.47307 * 90.02426 * 5 4 3 7 7 N 5.12938 * 133.62840 * 41.43559 * 2 1 3 8 8 S 1.70891 * 110.87453 * 359.72141 * 4 3 2 9 9 C 1.38591 * 123.22600 * 180.02562 * 2 1 3 10 10 C 1.40048 * 126.25196 * 359.97438 * 9 2 1 11 11 H 1.08001 * 119.99889 * 352.98620 * 10 9 2 12 12 C 1.40071 * 119.99876 * 173.26869 * 10 9 2 13 13 N 1.30860 * 119.99935 * 6.29324 * 12 10 9 14 14 Si 1.86798 * 119.99728 * 186.29197 * 12 10 9 15 15 H 1.48500 * 109.47066 * 94.98745 * 14 12 10 16 16 H 1.48496 * 109.47181 * 214.98538 * 14 12 10 17 17 H 1.48496 * 109.47634 * 334.98689 * 14 12 10 18 18 H 1.09004 * 109.47577 * 269.97999 * 1 2 3 19 19 H 1.09000 * 109.47050 * 29.98439 * 1 2 3 20 20 H 1.09001 * 109.47003 * 149.97747 * 1 2 3 21 21 H 1.09005 * 109.46860 * 210.02271 * 5 4 3 22 22 H 1.09001 * 109.47215 * 330.01932 * 5 4 3 23 23 H 0.97003 * 119.99792 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2230 1.0931 0.0000 4 6 3.5120 0.9669 -0.0005 5 6 4.4838 2.1187 -0.0011 6 6 4.8013 2.4936 1.3864 7 7 5.0461 2.7835 2.4570 8 16 3.9625 -0.6816 0.0067 9 6 2.2663 -1.1593 -0.0005 10 6 1.7754 -2.4709 -0.0006 11 1 0.7167 -2.6512 0.1140 12 6 2.6581 -3.5491 -0.1433 13 7 3.9499 -3.3403 -0.1528 14 14 1.9911 -5.2850 -0.3201 15 1 1.8928 -5.6333 -1.7603 16 1 2.9057 -6.2381 0.3583 17 1 0.6447 -5.3637 0.3012 18 1 -0.3634 -0.0004 1.0277 19 1 -0.3633 0.8901 -0.5136 20 1 -0.3633 -0.8898 -0.5142 21 1 5.3980 1.8224 -0.5157 22 1 4.0376 2.9703 -0.5147 23 1 4.5611 -4.0870 -0.2521 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259949109.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:26 Heat of formation + Delta-G solvation = 30.665107 kcal Electronic energy + Delta-G solvation = -10795.811103 eV Core-core repulsion = 8734.537556 eV Total energy + Delta-G solvation = -2061.273548 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.85299 -35.99023 -34.39691 -31.66663 -29.04609 -27.94292 -23.88985 -21.80134 -18.84471 -17.42217 -16.67710 -15.87334 -15.20325 -14.01798 -13.72980 -13.26604 -12.87322 -12.29756 -12.10908 -12.05177 -11.71937 -11.64304 -11.13253 -11.10397 -11.00996 -10.82730 -10.42114 -9.90641 -9.37658 -7.99318 -7.88333 -7.21064 -7.14887 -4.71784 2.32708 2.82876 2.89107 2.92140 3.24802 3.37947 3.46783 3.54778 3.87056 4.06717 4.74316 4.98434 5.61121 5.98357 6.15925 6.41051 6.59636 6.64768 6.72490 6.85502 7.21720 7.57342 7.81538 8.15162 8.21850 8.23469 9.61249 9.64026 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.043444 B = 0.010501 C = 0.008989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.353717 B = 2665.773730 C = 3114.116997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 C -0.144 4.144 3 N -0.414 5.414 4 C -0.207 4.207 5 C 0.086 3.914 6 C 0.228 3.772 7 N -0.468 5.468 8 S 0.132 5.868 9 C 0.005 3.995 10 C -0.360 4.360 11 H 0.102 0.898 12 C 0.048 3.952 13 N -0.767 5.767 14 Si 0.938 3.062 15 H -0.263 1.263 16 H -0.271 1.271 17 H -0.256 1.256 18 H 0.037 0.963 19 H 0.044 0.956 20 H 0.052 0.948 21 H 0.105 0.895 22 H 0.107 0.893 23 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.051 -1.835 -3.574 4.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.281 4.281 3 N -0.127 5.127 4 C -0.474 4.474 5 C 0.043 3.957 6 C -0.089 4.089 7 N -0.146 5.146 8 S 0.384 5.616 9 C -0.119 4.119 10 C -0.398 4.398 11 H 0.120 0.880 12 C -0.175 4.175 13 N -0.393 5.393 14 Si 0.761 3.239 15 H -0.188 1.188 16 H -0.196 1.196 17 H -0.179 1.179 18 H 0.056 0.944 19 H 0.063 0.937 20 H 0.071 0.929 21 H 0.123 0.877 22 H 0.125 0.875 23 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.401 -1.306 -1.978 2.753 hybrid contribution -1.230 -0.913 -0.467 1.602 sum 0.170 -2.219 -2.445 3.306 Atomic orbital electron populations 1.19652 0.90016 1.00073 0.99422 1.19913 0.95646 0.86147 1.26420 1.64948 1.05008 1.33738 1.09025 1.25017 0.93384 0.99045 1.29983 1.17141 0.97941 0.96633 0.84012 1.29628 0.91767 0.91934 0.95610 1.81056 1.10649 1.10609 1.12294 1.83998 1.07977 0.95948 1.73653 1.23146 0.93962 0.97221 0.97572 1.19285 0.96226 0.88517 1.35756 0.88008 1.26296 0.94518 1.03535 0.93141 1.69010 1.03283 1.35627 1.31357 0.85748 0.80105 0.78347 0.79726 1.18823 1.19602 1.17944 0.94431 0.93704 0.92890 0.87692 0.87470 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.68 10.04 36.00 0.36 -0.32 14 2 C -0.14 -3.60 6.90 -82.96 -0.57 -4.17 14 3 N -0.41 -10.29 10.48 -7.08 -0.07 -10.36 14 4 C -0.21 -4.69 6.57 -13.25 -0.09 -4.78 14 5 C 0.09 1.50 6.27 -30.67 -0.19 1.31 14 6 C 0.23 4.44 15.41 -20.77 -0.32 4.12 14 7 N -0.47 -9.96 18.54 42.15 0.78 -9.18 14 8 S 0.13 3.13 20.27 -107.50 -2.18 0.95 14 9 C 0.00 0.12 6.24 -38.77 -0.24 -0.12 14 10 C -0.36 -8.60 8.87 -38.22 -0.34 -8.94 14 11 H 0.10 2.27 7.06 -52.49 -0.37 1.90 14 12 C 0.05 1.06 5.49 -17.28 -0.09 0.96 14 13 N -0.77 -17.46 10.80 55.56 0.60 -16.86 14 14 Si 0.94 16.42 29.57 -169.99 -5.03 11.39 14 15 H -0.26 -4.55 7.11 56.52 0.40 -4.15 14 16 H -0.27 -4.66 7.11 56.52 0.40 -4.26 14 17 H -0.26 -4.42 7.11 56.52 0.40 -4.02 14 18 H 0.04 0.75 8.14 -51.93 -0.42 0.33 14 19 H 0.04 0.88 8.14 -51.93 -0.42 0.46 14 20 H 0.05 1.03 7.24 -51.93 -0.38 0.66 14 21 H 0.11 1.50 8.14 -51.93 -0.42 1.08 14 22 H 0.11 1.63 8.14 -51.93 -0.42 1.21 14 23 H 0.30 6.09 8.30 -40.82 -0.34 5.75 14 LS Contribution 231.93 15.07 3.50 3.50 Total: -1.00 -28.09 231.93 -5.46 -33.55 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -1.57 Total: -1.05 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -1.49 Total: -11.94 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 1.31 Total: -36.40 kcal Atomic # 14 Polarization: 16.42 SS G_CDS: -5.03 Total: 11.39 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -2.18 Total: 0.95 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -28.09 -5.46 -33.55 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259949109.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.216 kcal (2) G-P(sol) polarization free energy of solvation -28.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds