Wall clock time and date at job start Mon Mar 30 2020 02:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30675 * 123.22659 * 2 1 4 4 C 1.29524 * 117.63418 * 180.02562 * 3 2 1 5 5 C 1.50696 * 124.56205 * 179.97438 * 4 3 2 6 6 C 1.47196 * 109.47307 * 90.02426 * 5 4 3 7 7 N 5.12938 * 133.62840 * 41.43559 * 2 1 3 8 8 S 1.70891 * 110.87453 * 359.72141 * 4 3 2 9 9 C 1.38591 * 123.22600 * 180.02562 * 2 1 3 10 10 C 1.40048 * 126.25196 * 359.97438 * 9 2 1 11 11 H 1.08001 * 119.99889 * 352.98620 * 10 9 2 12 12 C 1.40071 * 119.99876 * 173.26869 * 10 9 2 13 13 N 1.30860 * 119.99935 * 6.29324 * 12 10 9 14 14 Si 1.86798 * 119.99728 * 186.29197 * 12 10 9 15 15 H 1.48500 * 109.47066 * 94.98745 * 14 12 10 16 16 H 1.48496 * 109.47181 * 214.98538 * 14 12 10 17 17 H 1.48496 * 109.47634 * 334.98689 * 14 12 10 18 18 H 1.09004 * 109.47577 * 269.97999 * 1 2 3 19 19 H 1.09000 * 109.47050 * 29.98439 * 1 2 3 20 20 H 1.09001 * 109.47003 * 149.97747 * 1 2 3 21 21 H 1.09005 * 109.46860 * 210.02271 * 5 4 3 22 22 H 1.09001 * 109.47215 * 330.01932 * 5 4 3 23 23 H 0.97003 * 119.99792 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2230 1.0931 0.0000 4 6 3.5120 0.9669 -0.0005 5 6 4.4838 2.1187 -0.0011 6 6 4.8013 2.4936 1.3864 7 7 5.0461 2.7835 2.4570 8 16 3.9625 -0.6816 0.0067 9 6 2.2663 -1.1593 -0.0005 10 6 1.7754 -2.4709 -0.0006 11 1 0.7167 -2.6512 0.1140 12 6 2.6581 -3.5491 -0.1433 13 7 3.9499 -3.3403 -0.1528 14 14 1.9911 -5.2850 -0.3201 15 1 1.8928 -5.6333 -1.7603 16 1 2.9057 -6.2381 0.3583 17 1 0.6447 -5.3637 0.3012 18 1 -0.3634 -0.0004 1.0277 19 1 -0.3633 0.8901 -0.5136 20 1 -0.3633 -0.8898 -0.5142 21 1 5.3980 1.8224 -0.5157 22 1 4.0376 2.9703 -0.5147 23 1 4.5611 -4.0870 -0.2521 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259949109.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:26 Heat of formation + Delta-G solvation = 13.903918 kcal Electronic energy + Delta-G solvation = -10796.537923 eV Core-core repulsion = 8734.537556 eV Total energy + Delta-G solvation = -2062.000368 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.62822 -37.59686 -36.11563 -33.31521 -30.71049 -29.64396 -25.65463 -23.52798 -20.61185 -19.14019 -18.28308 -17.59757 -16.80981 -15.59093 -15.24556 -15.00861 -14.51786 -13.95165 -13.76137 -13.66665 -13.40823 -13.18474 -12.74856 -12.70444 -12.62943 -12.26508 -11.93380 -11.50833 -11.20257 -9.80413 -9.70808 -9.01735 -8.86554 -6.51214 0.59839 1.39395 1.44604 1.54312 1.57284 1.83115 1.85367 1.98548 2.18222 2.34964 3.03500 3.40083 4.02888 4.62377 4.75380 4.83105 4.92555 4.95810 5.07259 5.19955 5.47679 5.80570 6.05516 6.42146 6.46073 6.64785 7.81295 7.97660 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.043444 B = 0.010501 C = 0.008989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.353717 B = 2665.773730 C = 3114.116997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 C -0.180 4.180 3 N -0.436 5.436 4 C -0.202 4.202 5 C 0.089 3.911 6 C 0.245 3.755 7 N -0.504 5.504 8 S 0.112 5.888 9 C -0.028 4.028 10 C -0.383 4.383 11 H 0.109 0.891 12 C 0.012 3.988 13 N -0.790 5.790 14 Si 1.010 2.990 15 H -0.257 1.257 16 H -0.264 1.264 17 H -0.252 1.252 18 H 0.040 0.960 19 H 0.053 0.947 20 H 0.061 0.939 21 H 0.143 0.857 22 H 0.137 0.863 23 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.063 -2.593 -4.198 4.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.315 4.315 3 N -0.149 5.149 4 C -0.471 4.471 5 C 0.046 3.954 6 C -0.072 4.072 7 N -0.183 5.183 8 S 0.365 5.635 9 C -0.151 4.151 10 C -0.420 4.420 11 H 0.127 0.873 12 C -0.208 4.208 13 N -0.416 5.416 14 Si 0.829 3.171 15 H -0.181 1.181 16 H -0.188 1.188 17 H -0.175 1.175 18 H 0.059 0.941 19 H 0.072 0.928 20 H 0.080 0.920 21 H 0.160 0.840 22 H 0.155 0.845 23 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.382 -2.051 -2.600 3.589 hybrid contribution -1.168 -0.659 -0.282 1.371 sum 0.213 -2.710 -2.882 3.962 Atomic orbital electron populations 1.19651 0.88168 1.00921 0.99859 1.20477 0.97289 0.86259 1.27496 1.65043 1.05871 1.33883 1.10074 1.25757 0.93606 0.99899 1.27864 1.17463 0.98561 0.95979 0.83409 1.29905 0.90722 0.90951 0.95668 1.81072 1.12004 1.11875 1.13306 1.83868 1.08020 0.97302 1.74314 1.23528 0.94683 0.98230 0.98693 1.19646 0.97119 0.88839 1.36362 0.87275 1.27246 0.94483 1.07140 0.91940 1.69034 1.04415 1.37341 1.30806 0.84698 0.79547 0.72975 0.79889 1.18144 1.18814 1.17493 0.94113 0.92843 0.91983 0.83963 0.84543 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.11 10.04 71.23 0.71 -0.40 14 2 C -0.18 -8.97 6.90 42.81 0.30 -8.67 14 3 N -0.44 -21.41 10.48 -176.30 -1.85 -23.26 14 4 C -0.20 -8.96 6.57 88.45 0.58 -8.38 14 5 C 0.09 2.88 6.27 28.04 0.18 3.05 14 6 C 0.24 9.11 15.41 89.44 1.38 10.49 14 7 N -0.50 -21.00 18.54 20.00 0.37 -20.62 14 8 S 0.11 5.33 20.27 -56.49 -1.14 4.18 14 9 C -0.03 -1.42 6.24 22.79 0.14 -1.28 14 10 C -0.38 -18.21 8.87 23.15 0.21 -18.01 14 11 H 0.11 4.84 7.06 -2.91 -0.02 4.82 14 12 C 0.01 0.53 5.49 85.28 0.47 1.00 14 13 N -0.79 -35.48 10.80 21.86 0.24 -35.25 14 14 Si 1.01 32.23 29.57 68.60 2.03 34.26 14 15 H -0.26 -7.92 7.11 99.48 0.71 -7.21 14 16 H -0.26 -8.05 7.11 99.48 0.71 -7.34 14 17 H -0.25 -7.80 7.11 99.48 0.71 -7.09 14 18 H 0.04 1.62 8.14 -2.39 -0.02 1.60 14 19 H 0.05 2.07 8.14 -2.39 -0.02 2.05 14 20 H 0.06 2.40 7.24 -2.39 -0.02 2.38 14 21 H 0.14 3.59 8.14 -2.38 -0.02 3.57 14 22 H 0.14 3.71 8.14 -2.39 -0.02 3.69 14 23 H 0.31 12.29 8.30 -92.71 -0.77 11.52 14 Total: -1.00 -59.73 231.93 4.84 -54.89 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.24 Total: 8.00 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: 3.96 Total: -22.20 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -1.24 Total: -79.13 kcal Atomic # 14 Polarization: 32.23 SS G_CDS: 2.03 Total: 34.26 kcal Atomic # 16 Polarization: 5.33 SS G_CDS: -1.14 Total: 4.18 kcal Total: -59.73 4.84 -54.89 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259949109.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.791 kcal (2) G-P(sol) polarization free energy of solvation -59.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds