Wall clock time and date at job start Mon Mar 30 2020 02:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39856 * 125.69825 * 2 1 4 4 C 1.30257 * 109.53744 * 180.02562 * 3 2 1 5 5 C 1.50706 * 125.87092 * 180.02562 * 4 3 2 6 6 C 1.53001 * 117.49878 * 8.72013 * 5 4 3 7 7 C 1.52993 * 117.49682 * 300.05947 * 5 4 3 8 8 C 1.41806 * 108.25917 * 359.76976 * 4 3 2 9 9 C 1.41192 * 126.63704 * 180.26932 * 8 4 3 10 10 H 1.07993 * 119.99848 * 326.69730 * 9 8 4 11 11 C 1.39558 * 119.99677 * 146.69627 * 9 8 4 12 12 N 1.31196 * 120.00192 * 340.84661 * 11 9 8 13 13 Si 1.86798 * 119.99591 * 160.84889 * 11 9 8 14 14 H 1.48496 * 109.47517 * 59.99919 * 13 11 9 15 15 H 1.48507 * 109.46778 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46974 * 299.99556 * 13 11 9 17 17 C 1.35152 * 125.70524 * 180.02562 * 2 1 3 18 18 N 1.37738 * 126.55905 * 359.95045 * 17 2 1 19 19 H 1.09001 * 109.47196 * 269.97737 * 1 2 3 20 20 H 1.08993 * 109.46911 * 29.98064 * 1 2 3 21 21 H 1.09003 * 109.46555 * 149.98014 * 1 2 3 22 22 H 1.09000 * 115.55177 * 154.38585 * 5 4 3 23 23 H 1.09000 * 117.49750 * 359.97438 * 6 5 4 24 24 H 1.08993 * 117.50118 * 145.02502 * 6 5 4 25 25 H 1.08999 * 117.50329 * 214.97599 * 7 5 4 26 26 H 1.09002 * 117.50034 * 359.97438 * 7 5 4 27 27 H 0.96997 * 120.00009 * 176.83464 * 12 11 9 28 28 H 0.96996 * 119.99812 * 352.01025 * 18 17 2 29 29 H 0.97000 * 119.99250 * 171.72851 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2811 1.1358 0.0000 4 6 3.5322 0.7732 -0.0005 5 6 4.7203 1.7004 -0.0002 6 6 4.4520 3.1924 0.2067 7 6 4.8587 2.6717 -1.1741 8 6 3.5841 -0.6439 0.0045 9 6 4.7472 -1.4444 0.0110 10 1 5.6368 -1.1083 -0.5009 11 6 4.7471 -2.6698 0.6788 12 7 3.8412 -2.9175 1.5949 13 14 6.0369 -3.9571 0.2683 14 1 7.3896 -3.4046 0.5328 15 1 5.8208 -5.1605 1.1113 16 1 5.9258 -4.3297 -1.1648 17 6 2.2538 -1.0975 -0.0005 18 7 1.8342 -2.4094 -0.0001 19 1 -0.3633 -0.0004 1.0277 20 1 -0.3633 0.8901 -0.5135 21 1 -0.3632 -0.8899 -0.5142 22 1 5.6366 1.2903 0.4244 23 1 3.4161 3.5034 0.3421 24 1 5.1919 3.7639 0.7669 25 1 5.8660 2.9010 -1.5217 26 1 4.0906 2.6398 -1.9470 27 1 3.8126 -3.7858 2.0264 28 1 0.8942 -2.6179 0.1173 29 1 2.4783 -3.1245 -0.1214 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259976080.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:29 Heat of formation + Delta-G solvation = 82.792709 kcal Electronic energy + Delta-G solvation = -13530.582216 eV Core-core repulsion = 11262.367976 eV Total energy + Delta-G solvation = -2268.214240 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.23594 -37.80341 -35.56926 -34.37181 -32.75489 -29.77337 -27.67279 -25.86866 -23.44102 -23.09261 -21.30803 -19.74220 -18.63500 -17.68342 -16.59431 -16.37257 -16.00452 -15.82210 -15.35482 -14.56106 -13.98613 -13.62013 -13.36037 -12.90769 -12.84897 -12.55794 -12.27254 -12.09653 -11.81977 -11.67151 -11.34328 -10.94777 -10.76869 -10.41381 -9.03416 -8.27287 -7.85764 -5.69120 1.44735 1.49176 1.57535 1.66848 2.11080 2.41002 2.48314 3.20530 3.53681 3.63301 4.05760 4.08184 4.20750 4.41908 4.51484 4.65627 4.69768 4.86062 5.05194 5.22977 5.41236 5.48054 5.61280 5.69730 6.11953 6.39315 6.67784 7.15999 7.20644 7.37007 7.57309 7.80559 8.88579 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.026839 B = 0.013939 C = 0.009732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.007639 B = 2008.244328 C = 2876.558502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.417 5.417 3 N -0.366 5.366 4 C 0.061 3.939 5 C -0.083 4.083 6 C -0.157 4.157 7 C -0.154 4.154 8 C -0.144 4.144 9 C -0.458 4.458 10 H 0.052 0.948 11 C 0.021 3.979 12 N -0.865 5.865 13 Si 0.953 3.047 14 H -0.276 1.276 15 H -0.280 1.280 16 H -0.271 1.271 17 C 0.289 3.711 18 N -0.819 5.819 19 H 0.062 0.938 20 H 0.089 0.911 21 H 0.090 0.910 22 H 0.106 0.894 23 H 0.084 0.916 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.079 0.921 27 H 0.266 0.734 28 H 0.385 0.615 29 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.112 2.889 -3.231 5.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.209 5.209 3 N -0.192 5.192 4 C -0.101 4.101 5 C -0.103 4.103 6 C -0.194 4.194 7 C -0.192 4.192 8 C -0.159 4.159 9 C -0.494 4.494 10 H 0.070 0.930 11 C -0.184 4.184 12 N -0.501 5.501 13 Si 0.778 3.222 14 H -0.202 1.202 15 H -0.206 1.206 16 H -0.196 1.196 17 C 0.062 3.938 18 N -0.369 5.369 19 H 0.081 0.919 20 H 0.108 0.892 21 H 0.109 0.891 22 H 0.124 0.876 23 H 0.103 0.897 24 H 0.135 0.865 25 H 0.137 0.863 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.213 0.787 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -4.049 3.781 -3.052 6.325 hybrid contribution 0.761 -1.969 0.176 2.118 sum -3.288 1.812 -2.877 4.730 Atomic orbital electron populations 1.21685 0.74504 1.04340 1.02529 1.47800 1.05924 1.02368 1.64843 1.76307 1.01871 1.06834 1.34223 1.21586 0.91991 0.93951 1.02523 1.20105 0.95087 0.89482 1.05632 1.22932 1.02500 0.94426 0.99572 1.22950 1.02992 1.02052 0.91188 1.17366 0.91422 0.90773 1.16375 1.18359 0.97362 1.03408 1.30263 0.92989 1.26038 0.98324 1.00524 0.93469 1.70139 1.36367 1.22553 1.21013 0.85697 0.79717 0.78269 0.78488 1.20155 1.20569 1.19575 1.18541 0.90026 0.81897 1.03320 1.40882 1.09922 1.02012 1.84122 0.91937 0.89232 0.89134 0.87628 0.89707 0.86526 0.86348 0.90249 0.92424 0.78725 0.75960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.57 11.22 127.77 1.43 5.00 15 2 N -0.42 -19.17 4.00 -364.16 -1.46 -20.63 15 3 N -0.37 -18.10 12.02 -46.43 -0.56 -18.66 15 4 C 0.06 3.16 6.80 43.68 0.30 3.46 15 5 C -0.08 -3.55 6.04 -11.54 -0.07 -3.62 15 6 C -0.16 -5.35 10.14 30.62 0.31 -5.04 15 7 C -0.15 -5.24 10.24 30.62 0.31 -4.92 15 8 C -0.14 -8.06 5.59 -21.11 -0.12 -8.18 15 9 C -0.46 -25.88 9.07 23.31 0.21 -25.66 15 10 H 0.05 2.93 7.91 -2.91 -0.02 2.91 15 11 C 0.02 1.12 4.33 85.11 0.37 1.49 15 12 N -0.87 -46.65 10.71 21.77 0.23 -46.42 15 13 Si 0.95 41.17 29.60 68.60 2.03 43.20 15 14 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 15 H -0.28 -11.67 7.11 99.48 0.71 -10.96 15 16 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 17 C 0.29 14.57 7.52 133.00 1.00 15.57 15 18 N -0.82 -35.75 7.96 -53.76 -0.43 -36.17 15 19 H 0.06 1.87 8.14 -2.39 -0.02 1.85 15 20 H 0.09 2.57 8.14 -2.39 -0.02 2.55 15 21 H 0.09 2.41 7.59 -2.39 -0.02 2.40 15 22 H 0.11 4.61 8.14 -2.39 -0.02 4.59 15 23 H 0.08 3.07 7.89 -2.39 -0.02 3.06 15 24 H 0.12 3.23 8.14 -2.39 -0.02 3.21 15 25 H 0.12 3.28 8.14 -2.39 -0.02 3.26 15 26 H 0.08 2.84 8.14 -2.39 -0.02 2.83 15 27 H 0.27 13.41 8.31 -92.71 -0.77 12.64 15 28 H 0.38 13.69 8.16 -92.71 -0.76 12.93 15 29 H 0.41 18.68 6.52 -92.71 -0.60 18.08 15 Total: -1.00 -66.60 251.79 3.38 -63.22 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: -0.19 Total: 37.38 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: 3.75 Total: -21.91 kcal Atomic # 7 Polarization: -119.67 SS G_CDS: -2.21 Total: -121.88 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -66.60 3.38 -63.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259976080.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.011 kcal (2) G-P(sol) polarization free energy of solvation -66.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds