Wall clock time and date at job start Mon Mar 30 2020 02:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99881 * 2 1 4 4 H 1.48503 * 109.46976 * 239.99431 * 3 2 1 5 5 H 1.48492 * 109.47210 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46799 * 119.99897 * 3 2 1 7 7 C 1.37878 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00014 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99707 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.18389 * 299.37476 * 9 7 2 11 11 C 1.52619 * 109.15924 * 58.82991 * 9 7 2 12 12 C 1.53098 * 109.87238 * 191.08152 * 11 9 7 13 13 S 1.81746 * 108.84085 * 296.93923 * 12 11 9 14 14 C 1.81745 * 102.22342 * 53.26273 * 13 12 11 15 15 C 1.52583 * 109.22261 * 179.97438 * 9 7 2 16 16 F 1.39905 * 109.39193 * 48.85199 * 15 9 7 17 17 F 1.39904 * 109.38884 * 289.05075 * 15 9 7 18 18 H 0.97001 * 119.99778 * 0.02562 * 1 2 3 19 19 H 1.08997 * 109.46485 * 70.94094 * 11 9 7 20 20 H 1.09005 * 109.40294 * 311.18477 * 11 9 7 21 21 H 1.08993 * 109.57822 * 177.13053 * 12 11 9 22 22 H 1.09001 * 109.57302 * 56.73917 * 12 11 9 23 23 H 1.09000 * 109.57781 * 186.93074 * 14 13 12 24 24 H 1.09002 * 109.68274 * 66.60160 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6342 -2.5566 0.8974 11 6 0.3548 -2.5601 -1.2333 12 6 -0.6156 -3.7382 -1.1141 13 16 0.3399 -5.2837 -1.0720 14 6 1.5172 -4.9716 0.2770 15 6 2.2475 -3.6546 0.0005 16 9 3.2085 -3.4392 0.9943 17 9 2.8770 -3.7250 -1.2469 18 1 -0.4850 0.8401 -0.0004 19 1 0.9706 -2.6873 -2.1236 20 1 -0.2111 -1.6321 -1.3161 21 1 -1.2867 -3.7470 -1.9728 22 1 -1.1953 -3.6423 -0.1960 23 1 2.2397 -5.7862 0.3270 24 1 0.9809 -4.9004 1.2232 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260091988.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:52 Heat of formation + Delta-G solvation = -112.568505 kcal Electronic energy + Delta-G solvation = -12497.557395 eV Core-core repulsion = 9979.383585 eV Total energy + Delta-G solvation = -2518.173810 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 208.043 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -47.98135 -45.94924 -35.59291 -32.16417 -30.17329 -27.81245 -23.75292 -22.17101 -19.84007 -17.05519 -16.86956 -15.79714 -15.42290 -15.01046 -14.40149 -13.60757 -13.37741 -12.78888 -12.64497 -12.32605 -12.11276 -11.77832 -11.63712 -11.26697 -10.95011 -10.68744 -10.51175 -10.20325 -9.71639 -9.28561 -9.09651 -8.49713 -7.29423 -6.18689 -4.27467 2.09208 2.88861 3.26179 3.29616 3.34053 4.28411 4.46666 5.03455 5.12521 5.29285 5.57870 5.68547 5.82366 5.90999 6.04462 6.24539 6.75678 6.91756 7.33178 7.59966 7.79226 8.07045 8.73697 9.37994 10.85849 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.044827 B = 0.013430 C = 0.011336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.471462 B = 2084.401633 C = 2469.493858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.901 3.099 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.064 0.936 9 C 0.010 3.990 10 H 0.051 0.949 11 C -0.118 4.118 12 C -0.075 4.075 13 S -0.266 6.266 14 C -0.125 4.125 15 C 0.293 3.707 16 F -0.202 7.202 17 F -0.196 7.196 18 H 0.265 0.735 19 H 0.059 0.941 20 H 0.121 0.879 21 H 0.095 0.905 22 H 0.081 0.919 23 H 0.110 0.890 24 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.509 -6.068 -0.372 6.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.729 3.271 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.082 0.918 9 C -0.009 4.009 10 H 0.069 0.931 11 C -0.157 4.157 12 C -0.222 4.222 13 S -0.040 6.040 14 C -0.274 4.274 15 C 0.255 3.745 16 F -0.183 7.183 17 F -0.177 7.177 18 H 0.075 0.925 19 H 0.077 0.923 20 H 0.139 0.861 21 H 0.113 0.887 22 H 0.099 0.901 23 H 0.128 0.872 24 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.747 -6.860 -1.013 6.975 hybrid contribution 0.699 1.833 0.812 2.123 sum -0.048 -5.027 -0.201 5.032 Atomic orbital electron populations 1.69788 1.05933 1.27171 1.49992 1.24904 0.94965 0.99380 0.94428 0.86483 0.79534 0.82141 0.78963 1.19984 1.21109 1.20018 1.20930 0.93340 0.89358 1.51526 0.91760 1.19605 0.92541 0.91695 0.97080 0.93069 1.21892 0.97043 0.98036 0.98749 1.23736 0.99765 0.93766 1.04973 1.86430 1.41558 1.28016 1.48007 1.24436 1.00882 1.00478 1.01591 1.21390 0.84686 0.96484 0.71974 1.92931 1.67039 1.96023 1.62296 1.92933 1.84295 1.97279 1.43188 0.92493 0.92265 0.86090 0.88654 0.90079 0.87189 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.91 11.19 55.43 0.62 -23.29 14 2 C 0.06 1.73 5.25 -17.82 -0.09 1.64 14 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 14 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 14 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 14 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 14 7 C -0.51 -13.90 8.09 -34.44 -0.28 -14.18 14 8 H 0.06 1.79 7.41 -52.49 -0.39 1.40 14 9 C 0.01 0.23 1.59 -92.18 -0.15 0.09 14 10 H 0.05 1.29 8.08 -51.93 -0.42 0.87 14 11 C -0.12 -2.64 4.84 -26.88 -0.13 -2.77 14 12 C -0.07 -1.38 6.45 37.21 0.24 -1.14 14 13 S -0.27 -4.77 21.96 -107.50 -2.36 -7.13 14 14 C -0.12 -2.24 5.98 37.21 0.22 -2.01 14 15 C 0.29 6.41 1.60 -26.89 -0.04 6.37 14 16 F -0.20 -4.60 16.21 2.25 0.04 -4.57 14 17 F -0.20 -4.51 15.52 2.25 0.03 -4.48 14 18 H 0.27 6.81 8.31 -40.82 -0.34 6.47 14 19 H 0.06 1.36 7.29 -51.93 -0.38 0.98 14 20 H 0.12 2.98 5.70 -51.93 -0.30 2.68 14 21 H 0.10 1.57 8.14 -51.93 -0.42 1.15 14 22 H 0.08 1.47 8.14 -51.93 -0.42 1.04 14 23 H 0.11 1.75 8.14 -51.93 -0.42 1.33 14 24 H 0.10 1.74 8.14 -51.93 -0.42 1.32 14 LS Contribution 218.92 15.07 3.30 3.30 Total: -1.00 -27.11 218.92 -5.93 -33.04 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -2.31 Total: -0.76 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -0.23 Total: -12.01 kcal Atomic # 7 Polarization: -23.91 SS G_CDS: 0.62 Total: -23.29 kcal Atomic # 9 Polarization: -9.11 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: -4.77 SS G_CDS: -2.36 Total: -7.13 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -27.11 -5.93 -33.04 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260091988.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.525 kcal (2) G-P(sol) polarization free energy of solvation -27.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds