Wall clock time and date at job start Mon Mar 30 2020 02:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30538 * 1 3 3 Si 1.86803 * 120.00101 * 2 1 4 4 H 1.48501 * 109.46944 * 269.99930 * 3 2 1 5 5 H 1.48503 * 109.47086 * 29.99698 * 3 2 1 6 6 H 1.48500 * 109.46800 * 149.99937 * 3 2 1 7 7 C 1.40659 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99794 * 179.97438 * 7 2 1 9 9 C 1.38803 * 120.00172 * 0.28064 * 7 2 1 10 10 C 1.38201 * 120.00244 * 159.86553 * 9 7 2 11 11 C 1.46320 * 120.00034 * 352.36539 * 10 9 7 12 12 C 1.40393 * 120.20921 * 326.76343 * 11 10 9 13 13 C 1.37712 * 119.80621 * 179.97438 * 12 11 10 14 14 C 1.38546 * 120.23117 * 359.97438 * 13 12 11 15 15 C 1.38641 * 120.42517 * 359.97438 * 14 13 12 16 16 Cl 1.73606 * 119.90309 * 180.02562 * 15 14 13 17 17 C 1.37868 * 120.19014 * 359.77365 * 15 14 13 18 18 H 0.97006 * 119.99563 * 0.02562 * 1 2 3 19 19 H 1.08004 * 119.99700 * 339.86067 * 9 7 2 20 20 H 1.08000 * 120.00639 * 172.36920 * 10 9 7 21 21 H 1.08004 * 120.09988 * 359.94684 * 12 11 10 22 22 H 1.08004 * 119.88660 * 180.02562 * 13 12 11 23 23 H 1.07998 * 119.78925 * 180.02562 * 14 13 12 24 24 H 1.07999 * 120.11507 * 180.26044 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 2.4869 2.0464 -1.4001 5 1 1.4368 2.6527 0.7000 6 1 3.5369 1.4401 0.7001 7 6 2.0086 -1.2182 0.0005 8 1 3.0887 -1.2182 0.0001 9 6 1.3146 -2.4202 -0.0048 10 6 1.9439 -3.5797 -0.4164 11 6 3.2830 -3.5167 -1.0030 12 6 3.6639 -2.4088 -1.7766 13 6 4.9264 -2.3579 -2.3242 14 6 5.8204 -3.3952 -2.1137 15 6 5.4547 -4.4933 -1.3505 16 17 6.5860 -5.7851 -1.0949 17 6 4.1970 -4.5599 -0.7897 18 1 -0.4850 0.8401 -0.0004 19 1 0.2827 -2.4494 0.3128 20 1 1.4475 -4.5324 -0.3053 21 1 2.9687 -1.5990 -1.9421 22 1 5.2209 -1.5060 -2.9193 23 1 6.8089 -3.3476 -2.5463 24 1 3.9149 -5.4140 -0.1919 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260103312.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:54 Heat of formation + Delta-G solvation = -3.141045 kcal Electronic energy + Delta-G solvation = -10775.597007 eV Core-core repulsion = 8678.521057 eV Total energy + Delta-G solvation = -2097.075950 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.035 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.80921 -37.39147 -36.36767 -33.87735 -31.57695 -30.22920 -27.26660 -23.47627 -23.15384 -20.77314 -19.09872 -17.30302 -16.64808 -16.19202 -15.95247 -15.07010 -14.47801 -14.37466 -14.03027 -13.46734 -13.10917 -12.77752 -12.60657 -12.29511 -12.12959 -11.83287 -11.74666 -11.44369 -11.15630 -10.31672 -9.48400 -9.02630 -8.88385 -6.37696 0.41240 0.57297 1.26815 1.31055 1.36949 1.51267 1.89554 2.14312 2.95533 3.38517 4.17001 4.29260 4.60778 4.73045 4.76559 4.93350 5.03478 5.17179 5.41377 5.47463 5.63241 5.79583 5.98005 6.20197 6.30411 6.48225 6.82464 6.98834 8.11007 Molecular weight = 208.03amu Principal moments of inertia in cm(-1) A = 0.050049 B = 0.008318 C = 0.007490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.314724 B = 3365.530809 C = 3737.540267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.033 3.967 3 Si 0.983 3.017 4 H -0.253 1.253 5 H -0.261 1.261 6 H -0.257 1.257 7 C -0.447 4.447 8 H 0.088 0.912 9 C 0.061 3.939 10 C -0.429 4.429 11 C 0.044 3.956 12 C -0.157 4.157 13 C -0.100 4.100 14 C -0.172 4.172 15 C -0.023 4.023 16 Cl -0.083 7.083 17 C -0.178 4.178 18 H 0.301 0.699 19 H 0.065 0.935 20 H 0.076 0.924 21 H 0.123 0.877 22 H 0.147 0.853 23 H 0.144 0.856 24 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.995 0.349 -2.788 8.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.186 4.186 3 Si 0.802 3.198 4 H -0.177 1.177 5 H -0.185 1.185 6 H -0.180 1.180 7 C -0.474 4.474 8 H 0.106 0.894 9 C 0.039 3.961 10 C -0.451 4.451 11 C 0.044 3.956 12 C -0.175 4.175 13 C -0.118 4.118 14 C -0.190 4.190 15 C -0.049 4.049 16 Cl -0.055 7.055 17 C -0.197 4.197 18 H 0.112 0.888 19 H 0.083 0.917 20 H 0.094 0.906 21 H 0.141 0.859 22 H 0.165 0.835 23 H 0.161 0.839 24 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.843 0.378 -2.748 8.319 hybrid contribution -0.231 0.138 0.284 0.391 sum 7.612 0.516 -2.465 8.017 Atomic orbital electron populations 1.69536 1.09482 1.32329 1.32892 1.27247 0.95591 1.05484 0.90305 0.85161 0.79145 0.75094 0.80379 1.17666 1.18507 1.18037 1.20014 0.95915 0.91330 1.40142 0.89425 1.20490 0.94783 0.92847 0.87943 1.21080 0.99097 0.96294 1.28587 1.18955 0.92842 0.92124 0.91694 1.21781 0.97365 0.99761 0.98592 1.21199 0.92930 0.98541 0.99167 1.21026 1.01391 0.93572 1.03039 1.20827 0.90912 0.91299 1.01880 1.98298 1.61178 1.50070 1.95927 1.21196 0.92571 1.01466 1.04505 0.88835 0.91668 0.90612 0.85936 0.83549 0.83864 0.86624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.77 12.95 21.96 0.28 -39.49 14 2 C 0.03 1.53 5.51 85.48 0.47 2.00 14 3 Si 0.98 35.15 29.57 68.60 2.03 37.18 14 4 H -0.25 -8.59 7.11 99.48 0.71 -7.89 14 5 H -0.26 -8.75 7.11 99.48 0.71 -8.04 14 6 H -0.26 -9.18 7.11 99.48 0.71 -8.47 14 7 C -0.45 -22.71 6.47 23.00 0.15 -22.56 14 8 H 0.09 4.43 5.80 -2.91 -0.02 4.41 14 9 C 0.06 3.22 9.29 22.40 0.21 3.43 14 10 C -0.43 -21.99 9.97 24.36 0.24 -21.75 14 11 C 0.04 2.09 5.39 -20.14 -0.11 1.98 14 12 C -0.16 -6.82 7.62 22.67 0.17 -6.65 14 13 C -0.10 -3.59 10.02 22.22 0.22 -3.36 14 14 C -0.17 -5.84 9.83 22.44 0.22 -5.62 14 15 C -0.02 -0.85 6.31 22.28 0.14 -0.70 14 16 Cl -0.08 -2.60 28.95 -2.72 -0.08 -2.68 14 17 C -0.18 -7.53 9.59 22.69 0.22 -7.32 14 18 H 0.30 12.92 8.29 -92.70 -0.77 12.15 14 19 H 0.07 3.59 7.59 -2.91 -0.02 3.57 14 20 H 0.08 3.80 8.06 -2.91 -0.02 3.78 14 21 H 0.12 5.63 6.07 -2.91 -0.02 5.61 14 22 H 0.15 4.19 8.06 -2.91 -0.02 4.16 14 23 H 0.14 3.96 8.06 -2.91 -0.02 3.94 14 24 H 0.12 4.73 8.06 -2.91 -0.02 4.70 14 Total: -1.00 -52.98 232.77 5.37 -47.61 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 1.20 Total: 17.93 kcal Atomic # 6 Polarization: -62.49 SS G_CDS: 1.94 Total: -60.55 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.28 Total: -39.49 kcal Atomic # 14 Polarization: 35.15 SS G_CDS: 2.03 Total: 37.18 kcal Atomic # 17 Polarization: -2.60 SS G_CDS: -0.08 Total: -2.68 kcal Total: -52.98 5.37 -47.61 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103312.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.469 kcal (2) G-P(sol) polarization free energy of solvation -52.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds