Wall clock time and date at job start Mon Mar 30 2020 02:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28854 * 125.67513 * 2 1 4 4 C 1.32598 * 108.53496 * 179.97438 * 3 2 1 5 5 C 1.41396 * 126.15714 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00182 * 180.02562 * 5 4 3 7 7 C 1.39875 * 119.99902 * 0.02562 * 5 4 3 8 8 N 1.30861 * 120.00134 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00109 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47055 * 89.99903 * 9 7 5 11 11 H 1.48496 * 109.46975 * 210.00436 * 9 7 5 12 12 H 1.48508 * 109.46708 * 330.00209 * 9 7 5 13 13 N 1.35091 * 107.68884 * 359.97438 * 4 3 2 14 14 C 1.30786 * 107.27415 * 0.02562 * 13 4 3 15 15 C 1.50698 * 126.07075 * 180.02562 * 14 13 4 16 16 C 1.53782 * 113.61416 * 39.10590 * 15 14 13 17 17 C 1.53959 * 87.01994 * 220.04931 * 16 15 14 18 18 C 1.53785 * 87.11145 * 25.36308 * 17 16 15 19 19 H 1.09004 * 109.47268 * 90.02856 * 1 2 3 20 20 H 1.09002 * 109.46828 * 210.02314 * 1 2 3 21 21 H 1.09001 * 109.47572 * 330.02870 * 1 2 3 22 22 H 0.96993 * 120.00142 * 179.97438 * 8 7 5 23 23 H 1.08997 * 112.85009 * 170.30259 * 15 14 13 24 24 H 1.08996 * 113.61707 * 334.56773 * 16 15 14 25 25 H 1.08996 * 113.61674 * 105.47150 * 16 15 14 26 26 H 1.09000 * 113.53731 * 270.81124 * 17 16 15 27 27 H 1.09000 * 113.74325 * 139.94289 * 17 16 15 28 28 H 1.08994 * 113.61741 * 220.09226 * 18 17 16 29 29 H 1.08998 * 113.68756 * 89.19458 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2165 1.0467 0.0000 4 6 3.4835 0.6559 0.0006 5 6 4.6172 1.5010 0.0013 6 1 5.6091 1.0739 0.0013 7 6 4.4539 2.8902 0.0020 8 7 3.2520 3.4078 0.0025 9 14 5.9515 4.0067 0.0022 10 1 6.3481 4.3032 -1.3978 11 1 5.6238 5.2742 0.7029 12 1 7.0733 3.3300 0.7016 13 7 3.4965 -0.6949 0.0015 14 6 2.2514 -1.0952 0.0009 15 6 1.7795 -2.5264 0.0021 16 6 2.6243 -3.4528 0.8926 17 6 2.4887 -4.5108 -0.2176 18 6 2.2868 -3.3433 -1.1980 19 1 -0.3634 -0.0005 -1.0277 20 1 -0.3633 -0.8898 0.5142 21 1 -0.3634 0.8902 0.5134 22 1 3.1388 4.3711 0.0033 23 1 0.7065 -2.6182 0.1705 24 1 3.6462 -3.1037 1.0405 25 1 2.1320 -3.7309 1.8244 26 1 1.6098 -5.1462 -0.1084 27 1 3.4018 -5.0784 -0.3968 28 1 1.5224 -3.5330 -1.9515 29 1 3.2155 -2.9632 -1.6236 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260303042.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:14 Heat of formation + Delta-G solvation = 99.920749 kcal Electronic energy + Delta-G solvation = -13369.350188 eV Core-core repulsion = 11101.878676 eV Total energy + Delta-G solvation = -2267.471512 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.18665 -38.04207 -33.65832 -32.36088 -29.85153 -27.38285 -25.80274 -25.25871 -23.95815 -20.57246 -19.91434 -18.47852 -17.08899 -15.63034 -15.01742 -14.88435 -14.72936 -14.12783 -13.04524 -12.44463 -12.42235 -12.03793 -12.00869 -11.72353 -11.09906 -11.02868 -10.77994 -10.34696 -10.23779 -10.13110 -10.03265 -9.53575 -9.16934 -8.41274 -8.14890 -7.44088 -6.28187 -4.19602 3.19320 3.26962 3.32474 3.39700 3.99518 4.22480 4.47694 4.94239 5.01322 5.04017 5.31039 5.35220 5.52885 5.74428 5.79666 5.83610 5.93347 5.99561 6.13839 6.15760 6.36338 6.43795 6.75843 7.03757 7.29850 7.59894 8.28225 8.47729 8.68097 9.05235 9.26679 10.44430 10.72854 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.048919 B = 0.008996 C = 0.007900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.232080 B = 3111.665424 C = 3543.514109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.344 5.344 3 N -0.349 5.349 4 C 0.318 3.682 5 C -0.436 4.436 6 H 0.083 0.917 7 C 0.073 3.927 8 N -0.784 5.784 9 Si 0.913 3.087 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.265 1.265 13 N -0.548 5.548 14 C 0.176 3.824 15 C -0.025 4.025 16 C -0.120 4.120 17 C -0.142 4.142 18 C -0.122 4.122 19 H 0.061 0.939 20 H 0.071 0.929 21 H 0.080 0.920 22 H 0.268 0.732 23 H 0.091 0.909 24 H 0.096 0.904 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.122 -9.401 -0.118 10.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.139 5.139 3 N -0.185 5.185 4 C 0.057 3.943 5 C -0.478 4.478 6 H 0.101 0.899 7 C -0.146 4.146 8 N -0.414 5.414 9 Si 0.738 3.262 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.189 1.189 13 N -0.277 5.277 14 C -0.099 4.099 15 C -0.046 4.046 16 C -0.159 4.159 17 C -0.180 4.180 18 C -0.161 4.161 19 H 0.079 0.921 20 H 0.089 0.911 21 H 0.099 0.901 22 H 0.079 0.921 23 H 0.109 0.891 24 H 0.115 0.885 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.224 -8.744 -0.110 10.186 hybrid contribution 0.263 0.560 -0.021 0.619 sum -4.961 -8.184 -0.131 9.571 Atomic orbital electron populations 1.21520 0.77170 1.02948 1.02006 1.47010 1.06734 1.04669 1.55487 1.75462 1.03022 1.07423 1.32549 1.20880 0.91018 0.85861 0.96493 1.18187 0.91031 0.89065 1.49542 0.89866 1.25706 0.96651 0.98534 0.93687 1.69972 1.21959 1.12205 1.37224 0.86254 0.82027 0.79187 0.78704 1.19909 1.20683 1.18887 1.71201 1.17336 1.12662 1.26544 1.24038 0.88213 0.91070 1.06614 1.20768 0.98593 0.86579 0.98694 1.22920 1.01724 0.95024 0.96201 1.22844 1.01474 0.96318 0.97349 1.22897 1.01978 0.95526 0.95655 0.92074 0.91067 0.90076 0.92147 0.89071 0.88534 0.92046 0.90684 0.91427 0.92015 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.85 11.13 59.85 0.67 2.51 15 2 N -0.34 -8.31 3.72 -65.01 -0.24 -8.55 15 3 N -0.35 -10.24 10.33 30.88 0.32 -9.93 15 4 C 0.32 9.65 7.64 -157.67 -1.20 8.45 15 5 C -0.44 -13.13 9.50 -37.77 -0.36 -13.49 15 6 H 0.08 2.42 7.84 -52.49 -0.41 2.00 15 7 C 0.07 2.06 5.49 -17.35 -0.10 1.96 15 8 N -0.78 -22.99 11.94 55.54 0.66 -22.33 15 9 Si 0.91 20.76 29.56 -169.99 -5.02 15.73 15 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 12 H -0.26 -5.90 7.11 56.52 0.40 -5.50 15 13 N -0.55 -14.96 11.08 -9.95 -0.11 -15.07 15 14 C 0.18 4.07 7.00 -155.37 -1.09 2.98 15 15 C -0.03 -0.43 4.01 -90.96 -0.36 -0.79 15 16 C -0.12 -1.84 7.63 -25.82 -0.20 -2.03 15 17 C -0.14 -1.79 8.09 -25.82 -0.21 -2.00 15 18 C -0.12 -1.83 7.63 -25.91 -0.20 -2.03 15 19 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 20 H 0.07 0.95 7.00 -51.93 -0.36 0.59 15 21 H 0.08 1.38 8.14 -51.93 -0.42 0.96 15 22 H 0.27 7.19 8.30 -40.82 -0.34 6.85 15 23 H 0.09 1.28 6.94 -51.93 -0.36 0.92 15 24 H 0.10 1.73 7.80 -51.93 -0.40 1.32 15 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 15 29 H 0.09 1.59 8.09 -51.93 -0.42 1.17 15 LS Contribution 250.90 15.07 3.78 3.78 Total: -1.00 -34.67 250.90 -7.29 -41.96 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -3.63 Total: -1.16 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -3.05 Total: -4.43 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.63 Total: -55.88 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -34.67 -7.29 -41.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260303042.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.885 kcal (2) G-P(sol) polarization free energy of solvation -34.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds