Wall clock time and date at job start Mon Mar 30 2020 02:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28854 * 125.67513 * 2 1 4 4 C 1.32598 * 108.53496 * 179.97438 * 3 2 1 5 5 C 1.41396 * 126.15714 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00182 * 180.02562 * 5 4 3 7 7 C 1.39875 * 119.99902 * 0.02562 * 5 4 3 8 8 N 1.30861 * 120.00134 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00109 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47055 * 89.99903 * 9 7 5 11 11 H 1.48496 * 109.46975 * 210.00436 * 9 7 5 12 12 H 1.48508 * 109.46708 * 330.00209 * 9 7 5 13 13 N 1.35091 * 107.68884 * 359.97438 * 4 3 2 14 14 C 1.30786 * 107.27415 * 0.02562 * 13 4 3 15 15 C 1.50698 * 126.07075 * 180.02562 * 14 13 4 16 16 C 1.53782 * 113.61416 * 39.10590 * 15 14 13 17 17 C 1.53959 * 87.01994 * 220.04931 * 16 15 14 18 18 C 1.53785 * 87.11145 * 25.36308 * 17 16 15 19 19 H 1.09004 * 109.47268 * 90.02856 * 1 2 3 20 20 H 1.09002 * 109.46828 * 210.02314 * 1 2 3 21 21 H 1.09001 * 109.47572 * 330.02870 * 1 2 3 22 22 H 0.96993 * 120.00142 * 179.97438 * 8 7 5 23 23 H 1.08997 * 112.85009 * 170.30259 * 15 14 13 24 24 H 1.08996 * 113.61707 * 334.56773 * 16 15 14 25 25 H 1.08996 * 113.61674 * 105.47150 * 16 15 14 26 26 H 1.09000 * 113.53731 * 270.81124 * 17 16 15 27 27 H 1.09000 * 113.74325 * 139.94289 * 17 16 15 28 28 H 1.08994 * 113.61741 * 220.09226 * 18 17 16 29 29 H 1.08998 * 113.68756 * 89.19458 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2165 1.0467 0.0000 4 6 3.4835 0.6559 0.0006 5 6 4.6172 1.5010 0.0013 6 1 5.6091 1.0739 0.0013 7 6 4.4539 2.8902 0.0020 8 7 3.2520 3.4078 0.0025 9 14 5.9515 4.0067 0.0022 10 1 6.3481 4.3032 -1.3978 11 1 5.6238 5.2742 0.7029 12 1 7.0733 3.3300 0.7016 13 7 3.4965 -0.6949 0.0015 14 6 2.2514 -1.0952 0.0009 15 6 1.7795 -2.5264 0.0021 16 6 2.6243 -3.4528 0.8926 17 6 2.4887 -4.5108 -0.2176 18 6 2.2868 -3.3433 -1.1980 19 1 -0.3634 -0.0005 -1.0277 20 1 -0.3633 -0.8898 0.5142 21 1 -0.3634 0.8902 0.5134 22 1 3.1388 4.3711 0.0033 23 1 0.7065 -2.6182 0.1705 24 1 3.6462 -3.1037 1.0405 25 1 2.1320 -3.7309 1.8244 26 1 1.6098 -5.1462 -0.1084 27 1 3.4018 -5.0784 -0.3968 28 1 1.5224 -3.5330 -1.9515 29 1 3.2155 -2.9632 -1.6236 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260303042.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:14 Heat of formation + Delta-G solvation = 76.645313 kcal Electronic energy + Delta-G solvation = -13370.359487 eV Core-core repulsion = 11101.878676 eV Total energy + Delta-G solvation = -2268.480811 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.10902 -39.29643 -35.67100 -34.29789 -31.72532 -29.30115 -27.40583 -26.45216 -25.61507 -22.50916 -21.58850 -19.88876 -19.00428 -17.51490 -16.74314 -16.55904 -16.07432 -15.81203 -14.81930 -13.94456 -13.88150 -13.40765 -13.31842 -13.14590 -12.90979 -12.77658 -12.57333 -12.18450 -11.91038 -11.50219 -11.34718 -11.14077 -11.11437 -10.36970 -10.21454 -9.47034 -8.38906 -6.40604 1.38695 1.40391 1.56429 1.60132 2.29745 2.38680 2.39542 3.53925 3.59072 3.81785 3.86905 4.05641 4.09032 4.14693 4.47092 4.61201 4.74163 4.81995 4.97636 5.03925 5.11777 5.17040 5.23708 5.33940 5.50235 5.69602 6.30797 6.45092 6.64204 6.95763 7.11412 8.39774 8.64357 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.048919 B = 0.008996 C = 0.007900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.232080 B = 3111.665424 C = 3543.514109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.355 5.355 3 N -0.386 5.386 4 C 0.280 3.720 5 C -0.479 4.479 6 H 0.075 0.925 7 C 0.026 3.974 8 N -0.821 5.821 9 Si 0.997 3.003 10 H -0.263 1.263 11 H -0.267 1.267 12 H -0.260 1.260 13 N -0.586 5.586 14 C 0.188 3.812 15 C -0.033 4.033 16 C -0.125 4.125 17 C -0.117 4.117 18 C -0.124 4.124 19 H 0.081 0.919 20 H 0.117 0.883 21 H 0.076 0.924 22 H 0.275 0.725 23 H 0.133 0.867 24 H 0.058 0.942 25 H 0.084 0.916 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.285 -10.794 -0.100 12.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.149 5.149 3 N -0.222 5.222 4 C 0.018 3.982 5 C -0.521 4.521 6 H 0.094 0.906 7 C -0.189 4.189 8 N -0.450 5.450 9 Si 0.817 3.183 10 H -0.188 1.188 11 H -0.192 1.192 12 H -0.184 1.184 13 N -0.316 5.316 14 C -0.087 4.087 15 C -0.054 4.054 16 C -0.164 4.164 17 C -0.154 4.154 18 C -0.163 4.163 19 H 0.099 0.901 20 H 0.136 0.864 21 H 0.095 0.905 22 H 0.085 0.915 23 H 0.150 0.850 24 H 0.077 0.923 25 H 0.103 0.897 26 H 0.131 0.869 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.433 -10.156 -0.093 12.022 hybrid contribution 0.494 0.878 -0.030 1.008 sum -5.939 -9.278 -0.123 11.016 Atomic orbital electron populations 1.22002 0.73396 1.05113 1.04005 1.47411 1.08933 1.03869 1.54698 1.75273 1.03259 1.10171 1.33527 1.21286 0.91793 0.87325 0.97754 1.18523 0.91012 0.90700 1.51820 0.90641 1.26715 1.00416 0.99429 0.92330 1.70078 1.24446 1.12959 1.37549 0.85004 0.77284 0.76758 0.79228 1.18823 1.19170 1.18364 1.71150 1.20234 1.11610 1.28614 1.25123 0.87130 0.93416 1.03046 1.21322 1.01005 0.82512 1.00523 1.22889 0.99590 0.95763 0.98149 1.22797 1.03485 0.95233 0.93882 1.22855 1.01022 0.96233 0.96147 0.90079 0.86432 0.90475 0.91472 0.84969 0.92283 0.89719 0.86874 0.90792 0.89357 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.10 11.13 127.77 1.42 4.52 15 2 N -0.35 -17.12 3.72 -359.59 -1.34 -18.46 15 3 N -0.39 -23.39 10.33 -56.21 -0.58 -23.97 15 4 C 0.28 17.82 7.64 134.85 1.03 18.85 15 5 C -0.48 -30.24 9.50 23.44 0.22 -30.02 15 6 H 0.08 4.64 7.84 -2.91 -0.02 4.62 15 7 C 0.03 1.51 5.49 85.23 0.47 1.98 15 8 N -0.82 -49.46 11.94 21.81 0.26 -49.20 15 9 Si 1.00 43.51 29.56 68.60 2.03 45.54 15 10 H -0.26 -10.98 7.11 99.48 0.71 -10.28 15 11 H -0.27 -10.94 7.11 99.48 0.71 -10.23 15 12 H -0.26 -11.00 7.11 99.48 0.71 -10.29 15 13 N -0.59 -33.31 11.08 -185.40 -2.05 -35.36 15 14 C 0.19 8.72 7.00 138.11 0.97 9.69 15 15 C -0.03 -1.03 4.01 -11.01 -0.04 -1.07 15 16 C -0.13 -3.55 7.63 31.18 0.24 -3.32 15 17 C -0.12 -2.48 8.09 31.18 0.25 -2.23 15 18 C -0.12 -3.42 7.63 31.12 0.24 -3.19 15 19 H 0.08 2.30 8.14 -2.38 -0.02 2.28 15 20 H 0.12 2.65 7.00 -2.39 -0.02 2.64 15 21 H 0.08 2.55 8.14 -2.39 -0.02 2.53 15 22 H 0.28 15.04 8.30 -92.71 -0.77 14.27 15 23 H 0.13 3.02 6.94 -2.39 -0.02 3.00 15 24 H 0.06 2.13 7.80 -2.39 -0.02 2.11 15 25 H 0.08 1.99 8.14 -2.39 -0.02 1.97 15 26 H 0.11 1.65 8.14 -2.39 -0.02 1.63 15 27 H 0.07 1.52 8.14 -2.39 -0.02 1.50 15 28 H 0.09 1.97 8.14 -2.39 -0.02 1.95 15 29 H 0.05 1.90 8.09 -2.39 -0.02 1.89 15 Total: -1.00 -80.89 250.90 4.25 -76.64 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 1.14 Total: 9.59 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 4.79 Total: -4.78 kcal Atomic # 7 Polarization: -123.28 SS G_CDS: -3.71 Total: -127.00 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -80.89 4.25 -76.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260303042.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.290 kcal (2) G-P(sol) polarization free energy of solvation -80.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds