Wall clock time and date at job start Mon Mar 30 2020 02:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47074 * 270.00332 * 3 2 1 5 5 H 1.48494 * 109.47286 * 30.00266 * 3 2 1 6 6 H 1.48497 * 109.47030 * 150.00693 * 3 2 1 7 7 C 1.37881 * 119.99639 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00365 * 359.97438 * 7 2 1 10 10 H 1.09007 * 110.12130 * 299.78493 * 9 7 2 11 11 C 1.53294 * 110.14645 * 178.03780 * 9 7 2 12 12 C 1.50689 * 104.98546 * 240.86009 * 11 9 7 13 13 O 1.21350 * 125.92813 * 180.25666 * 12 11 9 14 14 C 1.47686 * 108.14134 * 0.02562 * 12 11 9 15 15 C 1.46233 * 137.00064 * 179.97438 * 14 12 11 16 16 C 1.31906 * 113.62288 * 180.02562 * 15 14 12 17 17 S 1.75165 * 110.76653 * 359.97438 * 16 15 14 18 18 C 1.36538 * 110.89977 * 359.97438 * 14 12 11 19 19 H 0.97004 * 120.00016 * 359.97438 * 1 2 3 20 20 H 1.09008 * 110.33682 * 121.98546 * 11 9 7 21 21 H 1.08997 * 110.33944 * 359.74629 * 11 9 7 22 22 H 1.08002 * 123.19256 * 0.03868 * 15 14 12 23 23 H 1.08001 * 124.62071 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6235 -2.5699 0.8880 11 6 2.2326 -3.6756 -0.0505 12 6 1.8999 -4.4068 -1.3253 13 8 2.4492 -5.4079 -1.7361 14 6 0.7855 -3.6970 -1.9852 15 6 -0.0064 -3.8491 -3.2051 16 6 -0.9276 -2.9173 -3.3569 17 16 -0.8940 -1.7870 -2.0191 18 6 0.3986 -2.6110 -1.2537 19 1 -0.4850 0.8401 0.0004 20 1 2.0857 -4.3284 0.8101 21 1 3.2594 -3.3112 -0.0795 22 1 0.1482 -4.6486 -3.9145 23 1 -1.6102 -2.8595 -4.1918 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260330499.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:17 Heat of formation + Delta-G solvation = -11.332280 kcal Electronic energy + Delta-G solvation = -11262.864632 eV Core-core repulsion = 9167.477190 eV Total energy + Delta-G solvation = -2095.387442 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.030 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.06262 -36.27007 -34.15608 -31.97648 -27.48697 -26.50067 -23.72035 -21.30098 -19.92668 -17.64731 -17.08465 -16.03397 -14.72627 -14.44013 -14.28000 -13.64706 -13.09320 -12.64951 -12.32243 -11.89681 -11.47877 -11.23181 -11.08083 -10.74639 -10.53922 -10.07473 -9.86003 -9.68279 -8.77116 -8.68841 -7.74783 -7.36011 -6.39210 -4.45799 1.84184 2.53225 2.58376 3.13860 3.22221 3.25182 3.28990 3.93391 4.19049 4.88269 5.01998 5.72348 5.85735 6.01800 6.14934 6.17387 6.47954 6.72359 6.77697 7.01223 7.16324 7.32343 7.56867 7.88868 8.40092 8.56286 9.19212 10.67105 Molecular weight = 208.03amu Principal moments of inertia in cm(-1) A = 0.033402 B = 0.014785 C = 0.011199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.079646 B = 1893.380213 C = 2499.663755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.060 3.940 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.504 4.504 8 H 0.070 0.930 9 C 0.100 3.900 10 H 0.057 0.943 11 C -0.159 4.159 12 C 0.431 3.569 13 O -0.491 6.491 14 C -0.296 4.296 15 C -0.079 4.079 16 C -0.321 4.321 17 S 0.282 5.718 18 C -0.079 4.079 19 H 0.272 0.728 20 H 0.090 0.910 21 H 0.102 0.898 22 H 0.122 0.878 23 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.073 -0.964 -1.767 2.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.542 4.542 8 H 0.088 0.912 9 C 0.080 3.920 10 H 0.075 0.925 11 C -0.198 4.198 12 C 0.312 3.688 13 O -0.371 6.371 14 C -0.309 4.309 15 C -0.108 4.108 16 C -0.456 4.456 17 S 0.549 5.451 18 C -0.201 4.201 19 H 0.083 0.917 20 H 0.108 0.892 21 H 0.120 0.880 22 H 0.140 0.860 23 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.830 -0.051 -1.650 3.277 hybrid contribution 1.218 -0.296 -0.577 1.380 sum -1.612 -0.347 -2.227 2.771 Atomic orbital electron populations 1.69467 1.06073 1.27919 1.48444 1.25038 0.95034 0.99822 0.94310 0.86364 0.79852 0.82195 0.78505 1.20285 1.20781 1.19550 1.21288 0.93371 0.89221 1.50296 0.91184 1.18042 0.90751 0.93192 0.90029 0.92485 1.22400 1.02822 0.98321 0.96274 1.22387 0.79166 0.81376 0.85892 1.90429 1.53463 1.23942 1.69314 1.22135 1.06234 1.03080 0.99434 1.20600 0.95244 0.99018 0.95976 1.25866 1.06922 1.04398 1.08381 1.83566 1.27886 1.23977 1.09707 1.26717 0.96444 0.94004 1.02902 0.91733 0.89164 0.87980 0.85991 0.83355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.00 10.50 55.43 0.58 -21.41 14 2 C 0.06 1.49 5.32 -17.82 -0.09 1.40 14 3 Si 0.90 19.53 29.54 -169.99 -5.02 14.51 14 4 H -0.28 -6.05 7.11 56.52 0.40 -5.64 14 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 14 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 14 7 C -0.50 -12.52 8.55 -34.44 -0.29 -12.82 14 8 H 0.07 1.71 7.34 -52.49 -0.39 1.32 14 9 C 0.10 2.33 2.92 -92.15 -0.27 2.06 14 10 H 0.06 1.37 8.14 -51.92 -0.42 0.95 14 11 C -0.16 -3.27 6.51 -27.74 -0.18 -3.45 14 12 C 0.43 9.64 7.77 -30.46 -0.24 9.40 14 13 O -0.49 -11.68 18.03 5.50 0.10 -11.58 14 14 C -0.30 -6.68 6.73 -103.44 -0.70 -7.37 14 15 C -0.08 -1.61 10.52 -38.28 -0.40 -2.01 14 16 C -0.32 -6.03 11.06 28.83 0.32 -5.71 14 17 S 0.28 5.89 20.75 -107.50 -2.23 3.66 14 18 C -0.08 -1.83 5.97 -34.30 -0.20 -2.03 14 19 H 0.27 6.50 8.31 -40.82 -0.34 6.16 14 20 H 0.09 1.62 8.14 -51.92 -0.42 1.20 14 21 H 0.10 2.02 7.39 -51.93 -0.38 1.64 14 22 H 0.12 2.23 8.06 -52.49 -0.42 1.81 14 23 H 0.15 2.30 8.06 -52.49 -0.42 1.87 14 LS Contribution 220.92 15.07 3.33 3.33 Total: -1.00 -26.90 220.92 -6.90 -33.80 By element: Atomic # 1 Polarization: -0.16 SS G_CDS: -1.59 Total: -1.75 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -2.06 Total: -20.54 kcal Atomic # 7 Polarization: -22.00 SS G_CDS: 0.58 Total: -21.41 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.10 Total: -11.58 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Atomic # 16 Polarization: 5.89 SS G_CDS: -2.23 Total: 3.66 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -26.90 -6.90 -33.80 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260330499.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.463 kcal (2) G-P(sol) polarization free energy of solvation -26.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds