Wall clock time and date at job start Mon Mar 30 2020 02:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47074 * 270.00332 * 3 2 1 5 5 H 1.48494 * 109.47286 * 30.00266 * 3 2 1 6 6 H 1.48497 * 109.47030 * 150.00693 * 3 2 1 7 7 C 1.37881 * 119.99639 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00365 * 359.97438 * 7 2 1 10 10 H 1.09007 * 110.12130 * 299.78493 * 9 7 2 11 11 C 1.53294 * 110.14645 * 178.03780 * 9 7 2 12 12 C 1.50689 * 104.98546 * 240.86009 * 11 9 7 13 13 O 1.21350 * 125.92813 * 180.25666 * 12 11 9 14 14 C 1.47686 * 108.14134 * 0.02562 * 12 11 9 15 15 C 1.46233 * 137.00064 * 179.97438 * 14 12 11 16 16 C 1.31906 * 113.62288 * 180.02562 * 15 14 12 17 17 S 1.75165 * 110.76653 * 359.97438 * 16 15 14 18 18 C 1.36538 * 110.89977 * 359.97438 * 14 12 11 19 19 H 0.97004 * 120.00016 * 359.97438 * 1 2 3 20 20 H 1.09008 * 110.33682 * 121.98546 * 11 9 7 21 21 H 1.08997 * 110.33944 * 359.74629 * 11 9 7 22 22 H 1.08002 * 123.19256 * 0.03868 * 15 14 12 23 23 H 1.08001 * 124.62071 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6235 -2.5699 0.8880 11 6 2.2326 -3.6756 -0.0505 12 6 1.8999 -4.4068 -1.3253 13 8 2.4492 -5.4079 -1.7361 14 6 0.7855 -3.6970 -1.9852 15 6 -0.0064 -3.8491 -3.2051 16 6 -0.9276 -2.9173 -3.3569 17 16 -0.8940 -1.7870 -2.0191 18 6 0.3986 -2.6110 -1.2537 19 1 -0.4850 0.8401 0.0004 20 1 2.0857 -4.3284 0.8101 21 1 3.2594 -3.3112 -0.0795 22 1 0.1482 -4.6486 -3.9145 23 1 -1.6102 -2.8595 -4.1918 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260330499.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:17 Heat of formation + Delta-G solvation = -25.636167 kcal Electronic energy + Delta-G solvation = -11263.484895 eV Core-core repulsion = 9167.477190 eV Total energy + Delta-G solvation = -2096.007705 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.030 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.79500 -38.01534 -35.86861 -33.76806 -29.18646 -28.26467 -25.49681 -22.96958 -21.59019 -19.36723 -18.89428 -17.77090 -16.52490 -16.13002 -15.99118 -15.32738 -14.66779 -14.45486 -14.09013 -13.56408 -13.19788 -12.92161 -12.80704 -12.41779 -12.24414 -11.85802 -11.53770 -11.41491 -10.59938 -10.45296 -9.41996 -9.02887 -8.23976 -6.36826 0.10153 0.92078 0.96662 1.43362 1.47645 1.55359 1.65311 2.23186 2.40675 3.05624 3.32040 4.03818 4.32507 4.35043 4.51490 4.61870 4.82588 5.08061 5.11667 5.36939 5.44227 5.63581 5.69029 6.05137 6.64805 6.68955 7.30378 8.81272 Molecular weight = 208.03amu Principal moments of inertia in cm(-1) A = 0.033402 B = 0.014785 C = 0.011199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.079646 B = 1893.380213 C = 2499.663755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.957 3.043 4 H -0.279 1.279 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.527 4.527 8 H 0.068 0.932 9 C 0.095 3.905 10 H 0.041 0.959 11 C -0.151 4.151 12 C 0.429 3.571 13 O -0.510 6.510 14 C -0.309 4.309 15 C -0.098 4.098 16 C -0.295 4.295 17 S 0.278 5.722 18 C -0.109 4.109 19 H 0.274 0.726 20 H 0.115 0.885 21 H 0.109 0.891 22 H 0.143 0.857 23 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.319 -0.744 -2.526 3.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.176 4.176 3 Si 0.782 3.218 4 H -0.205 1.205 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.564 4.564 8 H 0.086 0.914 9 C 0.075 3.925 10 H 0.059 0.941 11 C -0.189 4.189 12 C 0.312 3.688 13 O -0.392 6.392 14 C -0.323 4.323 15 C -0.126 4.126 16 C -0.430 4.430 17 S 0.544 5.456 18 C -0.230 4.230 19 H 0.084 0.916 20 H 0.133 0.867 21 H 0.127 0.873 22 H 0.161 0.839 23 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -3.080 0.169 -2.401 3.909 hybrid contribution 1.228 -0.386 -0.367 1.339 sum -1.852 -0.217 -2.768 3.337 Atomic orbital electron populations 1.69575 1.06775 1.28481 1.48642 1.25645 0.95785 1.02179 0.94032 0.85546 0.78893 0.79151 0.78165 1.20503 1.20405 1.19332 1.21511 0.93493 0.90298 1.51145 0.91434 1.17994 0.91079 0.93691 0.89736 0.94134 1.22360 1.02433 0.97629 0.96527 1.22609 0.78932 0.81017 0.86285 1.90415 1.54145 1.24729 1.69891 1.22488 1.06476 1.02900 1.00426 1.20854 0.95531 1.00380 0.95833 1.26173 1.06421 1.02369 1.07991 1.83441 1.27100 1.24544 1.10506 1.26798 0.97855 0.95116 1.03247 0.91637 0.86661 0.87331 0.83905 0.79421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -44.48 10.50 21.45 0.23 -44.25 14 2 C 0.02 1.20 5.32 84.66 0.45 1.65 14 3 Si 0.96 39.55 29.54 68.60 2.03 41.58 14 4 H -0.28 -11.56 7.11 99.48 0.71 -10.85 14 5 H -0.28 -11.27 7.11 99.48 0.71 -10.56 14 6 H -0.27 -10.92 7.11 99.48 0.71 -10.22 14 7 C -0.53 -26.13 8.55 25.60 0.22 -25.91 14 8 H 0.07 3.29 7.34 -2.91 -0.02 3.26 14 9 C 0.10 4.43 2.92 -11.78 -0.03 4.39 14 10 H 0.04 1.99 8.14 -2.38 -0.02 1.97 14 11 C -0.15 -6.10 6.51 29.94 0.19 -5.91 14 12 C 0.43 18.88 7.77 28.18 0.22 19.10 14 13 O -0.51 -23.84 18.03 -3.25 -0.06 -23.90 14 14 C -0.31 -13.64 6.73 -19.10 -0.13 -13.77 14 15 C -0.10 -3.74 10.52 23.50 0.25 -3.49 14 16 C -0.30 -10.20 11.06 66.98 0.74 -9.46 14 17 S 0.28 11.23 20.75 -56.49 -1.17 10.06 14 18 C -0.11 -4.97 5.97 25.69 0.15 -4.82 14 19 H 0.27 12.93 8.31 -92.71 -0.77 12.16 14 20 H 0.12 4.01 8.14 -2.38 -0.02 3.99 14 21 H 0.11 4.23 7.39 -2.39 -0.02 4.21 14 22 H 0.14 4.82 8.06 -2.91 -0.02 4.80 14 23 H 0.19 4.95 8.06 -2.91 -0.02 4.92 14 Total: -1.00 -55.37 220.92 4.31 -51.06 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: 1.23 Total: 3.68 kcal Atomic # 6 Polarization: -40.30 SS G_CDS: 2.06 Total: -38.23 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.23 Total: -44.25 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.06 Total: -23.90 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Atomic # 16 Polarization: 11.23 SS G_CDS: -1.17 Total: 10.06 kcal Total: -55.37 4.31 -51.06 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260330499.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.428 kcal (2) G-P(sol) polarization free energy of solvation -55.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds