Wall clock time and date at job start Mon Mar 30 2020 02:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00255 * 2 1 4 4 H 1.48493 * 109.47242 * 240.00297 * 3 2 1 5 5 H 1.48502 * 109.47232 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.46877 * 120.00159 * 3 2 1 7 7 C 1.37881 * 119.99300 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99264 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00223 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.27648 * 299.36415 * 9 7 2 11 11 C 1.53469 * 110.31142 * 61.45838 * 9 7 2 12 12 C 1.50698 * 104.70160 * 119.01400 * 11 9 7 13 13 O 1.21442 * 125.55549 * 180.02562 * 12 11 9 14 14 C 1.41995 * 108.89496 * 0.02562 * 12 11 9 15 15 S 1.76769 * 138.92677 * 180.02562 * 14 12 11 16 16 C 1.70310 * 91.69592 * 179.97438 * 15 14 12 17 17 C 1.33394 * 111.06754 * 0.24625 * 16 15 14 18 18 C 1.37098 * 112.06917 * 0.02562 * 14 12 11 19 19 H 0.97000 * 119.99256 * 359.97438 * 1 2 3 20 20 H 1.09001 * 110.39043 * 0.20322 * 11 9 7 21 21 H 1.09010 * 110.48764 * 237.86895 * 11 9 7 22 22 H 1.08002 * 124.46202 * 179.97438 * 16 15 14 23 23 H 1.08002 * 122.24042 * 179.75783 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.6282 -2.5757 0.8908 11 6 0.3885 -2.6163 -1.2646 12 6 0.9131 -3.8382 -1.9736 13 8 0.4950 -4.2783 -3.0254 14 6 1.9760 -4.3912 -1.2115 15 16 3.1037 -5.7503 -1.2875 16 6 3.8297 -5.2958 0.1845 17 6 3.2520 -4.2035 0.6870 18 6 2.2192 -3.6726 -0.0696 19 1 -0.4849 0.8401 0.0004 20 1 0.5101 -1.7323 -1.8906 21 1 -0.6602 -2.7518 -0.9997 22 1 4.6471 -5.8249 0.6518 23 1 3.5697 -3.7607 1.6194 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260359946.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:06 Heat of formation + Delta-G solvation = -21.350316 kcal Electronic energy + Delta-G solvation = -11163.733001 eV Core-core repulsion = 9067.911144 eV Total energy + Delta-G solvation = -2095.821857 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.030 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.17678 -38.63069 -35.75258 -33.65447 -29.65516 -28.18125 -25.81318 -23.23859 -21.61857 -19.55429 -18.74154 -18.03061 -16.62025 -16.21905 -15.82995 -15.44169 -15.12222 -14.44086 -13.98613 -13.76788 -13.33764 -12.99800 -12.74548 -12.50391 -12.28004 -12.06413 -11.45981 -11.26536 -10.89242 -10.43741 -9.74817 -9.24154 -8.17948 -6.31366 -0.58445 0.55949 1.09120 1.29654 1.45716 1.46790 1.54179 1.99296 2.44091 3.12655 3.56523 3.89002 4.14040 4.34235 4.55537 4.66010 4.83616 5.03395 5.27698 5.35665 5.44527 5.66483 5.73298 6.14959 6.56661 6.75615 7.37392 8.89433 Molecular weight = 208.03amu Principal moments of inertia in cm(-1) A = 0.040882 B = 0.011266 C = 0.009569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.739946 B = 2484.678697 C = 2925.323164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.021 3.979 3 Si 0.958 3.042 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.092 3.908 10 H 0.040 0.960 11 C -0.129 4.129 12 C 0.431 3.569 13 O -0.516 6.516 14 C -0.384 4.384 15 S 0.236 5.764 16 C -0.192 4.192 17 C -0.161 4.161 18 C 0.001 3.999 19 H 0.266 0.734 20 H 0.086 0.914 21 H 0.085 0.915 22 H 0.214 0.786 23 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.314 -7.956 2.113 11.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.179 4.179 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.567 4.567 8 H 0.079 0.921 9 C 0.072 3.928 10 H 0.058 0.942 11 C -0.169 4.169 12 C 0.316 3.684 13 O -0.399 6.399 14 C -0.500 4.500 15 S 0.506 5.494 16 C -0.329 4.329 17 C -0.191 4.191 18 C -0.014 4.014 19 H 0.075 0.925 20 H 0.104 0.896 21 H 0.103 0.897 22 H 0.231 0.769 23 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.238 -9.297 0.562 11.796 hybrid contribution -0.197 2.304 1.038 2.535 sum 7.041 -6.993 1.600 10.052 Atomic orbital electron populations 1.70046 1.07139 1.28020 1.49845 1.25701 0.95683 1.02310 0.94240 0.85597 0.78384 0.78724 0.78942 1.20013 1.20961 1.19109 1.21142 0.93198 0.90024 1.52350 0.92114 1.18094 0.90813 0.90116 0.93761 0.94222 1.22178 1.00562 0.95196 0.98944 1.21116 0.79932 0.84447 0.82894 1.90441 1.61519 1.65017 1.22971 1.25328 1.10779 1.07508 1.06424 1.82440 1.24575 1.23619 1.18794 1.25722 1.05598 1.00997 1.00612 1.19672 0.97668 0.98253 1.03547 1.21895 0.93903 0.94038 0.91603 0.92464 0.89575 0.89700 0.76924 0.82597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.94 12.35 21.45 0.26 -49.67 14 2 C 0.02 1.11 5.09 84.65 0.43 1.54 14 3 Si 0.96 41.49 29.54 68.60 2.03 43.52 14 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 14 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 14 6 H -0.27 -11.07 7.11 99.48 0.71 -10.37 14 7 C -0.53 -27.50 8.44 25.60 0.22 -27.29 14 8 H 0.06 3.10 7.77 -2.91 -0.02 3.08 14 9 C 0.09 4.47 2.96 -11.62 -0.03 4.44 14 10 H 0.04 2.03 8.14 -2.39 -0.02 2.01 14 11 C -0.13 -6.26 5.64 30.00 0.17 -6.09 14 12 C 0.43 20.04 7.50 26.62 0.20 20.24 14 13 O -0.52 -25.55 18.04 -3.53 -0.06 -25.61 14 14 C -0.38 -15.69 7.07 22.93 0.16 -15.53 14 15 S 0.24 6.93 23.12 -56.49 -1.31 5.63 14 16 C -0.19 -4.83 10.89 66.72 0.73 -4.10 14 17 C -0.16 -5.19 10.15 21.26 0.22 -4.97 14 18 C 0.00 0.04 5.99 -19.54 -0.12 -0.08 14 19 H 0.27 13.92 8.31 -92.71 -0.77 13.15 14 20 H 0.09 4.57 7.23 -2.39 -0.02 4.55 14 21 H 0.08 4.06 8.14 -2.38 -0.02 4.04 14 22 H 0.21 3.26 8.06 -2.91 -0.02 3.24 14 23 H 0.16 4.50 8.06 -2.91 -0.02 4.48 14 Total: -1.00 -60.43 223.79 4.11 -56.31 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: 1.22 Total: 1.66 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 1.97 Total: -31.84 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.26 Total: -49.67 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.06 Total: -25.61 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Atomic # 16 Polarization: 6.93 SS G_CDS: -1.31 Total: 5.63 kcal Total: -60.43 4.11 -56.31 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260359946.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.964 kcal (2) G-P(sol) polarization free energy of solvation -60.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds