Wall clock time and date at job start Mon Mar 30 2020 02:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30544 * 1 3 3 Si 1.86802 * 119.99956 * 2 1 4 4 H 1.48494 * 109.47280 * 239.99604 * 3 2 1 5 5 H 1.48495 * 109.46992 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47037 * 119.99773 * 3 2 1 7 7 C 1.40648 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00727 * 180.02562 * 7 2 1 9 9 C 1.38804 * 119.99685 * 0.02562 * 7 2 1 10 10 C 1.38219 * 120.00092 * 169.79032 * 9 7 2 11 11 C 1.46269 * 119.99901 * 352.45659 * 10 9 7 12 12 C 1.40393 * 120.22630 * 321.53364 * 11 10 9 13 13 C 1.37680 * 119.78834 * 179.72102 * 12 11 10 14 14 C 1.38599 * 120.25463 * 0.57995 * 13 12 11 15 15 C 1.38460 * 120.46286 * 359.69263 * 14 13 12 16 16 C 1.37917 * 120.19801 * 0.02562 * 15 14 13 17 17 Cl 1.73601 * 120.12241 * 179.97438 * 16 15 14 18 18 H 0.96994 * 119.99923 * 0.02562 * 1 2 3 19 19 H 1.07998 * 119.99936 * 349.51278 * 9 7 2 20 20 H 1.07998 * 120.00525 * 172.45889 * 10 9 7 21 21 H 1.08001 * 120.10856 * 0.02562 * 12 11 10 22 22 H 1.08000 * 119.87346 * 180.29388 * 13 12 11 23 23 H 1.07996 * 119.77206 * 179.71807 * 14 13 12 24 24 H 1.07992 * 119.90327 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6178 0.0000 4 1 3.0932 1.6964 -1.2124 5 1 1.2744 2.7464 0.0006 6 1 3.0932 1.6964 1.2126 7 6 2.0088 -1.2180 0.0005 8 1 3.0887 -1.2181 0.0010 9 6 1.3147 -2.4201 0.0005 10 6 1.9895 -3.6077 -0.2111 11 6 3.4000 -3.5885 -0.5978 12 6 3.8753 -2.6135 -1.4892 13 6 5.2059 -2.6003 -1.8425 14 6 6.0737 -3.5524 -1.3312 15 6 5.6151 -4.5221 -0.4557 16 6 4.2871 -4.5495 -0.0845 17 17 3.7141 -5.7666 1.0127 18 1 -0.4850 0.8400 -0.0004 19 1 0.2482 -2.4279 0.1704 20 1 1.4753 -4.5498 -0.0910 21 1 3.2004 -1.8732 -1.8926 22 1 5.5740 -1.8481 -2.5244 23 1 7.1150 -3.5375 -1.6171 24 1 6.2993 -5.2593 -0.0624 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260384629.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:30 Heat of formation + Delta-G solvation = -3.753066 kcal Electronic energy + Delta-G solvation = -10883.120390 eV Core-core repulsion = 8786.017901 eV Total energy + Delta-G solvation = -2097.102489 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.035 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.74697 -37.04667 -36.44865 -33.94004 -31.34057 -30.33535 -27.18576 -23.54135 -22.98697 -20.72781 -19.08149 -17.29808 -16.74033 -16.18109 -15.74070 -14.98678 -14.54340 -14.40729 -13.89238 -13.38152 -13.07936 -12.70924 -12.61645 -12.14455 -12.04303 -11.79678 -11.68560 -11.49590 -11.05818 -10.24953 -9.47169 -8.99392 -8.89223 -6.34676 0.44816 0.64088 1.30100 1.35771 1.48394 1.58705 1.92564 2.13471 3.00452 3.40490 4.21518 4.34771 4.49762 4.74770 4.81855 5.01013 5.05711 5.20168 5.49910 5.51835 5.73958 5.77751 6.01114 6.20592 6.31050 6.48981 6.86879 7.02490 8.10539 Molecular weight = 208.03amu Principal moments of inertia in cm(-1) A = 0.036234 B = 0.010540 C = 0.008755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.567246 B = 2655.913697 C = 3197.494321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.033 3.967 3 Si 0.985 3.015 4 H -0.250 1.250 5 H -0.261 1.261 6 H -0.259 1.259 7 C -0.446 4.446 8 H 0.088 0.912 9 C 0.057 3.943 10 C -0.428 4.428 11 C 0.041 3.959 12 C -0.153 4.153 13 C -0.111 4.111 14 C -0.164 4.164 15 C -0.104 4.104 16 C -0.104 4.104 17 Cl -0.095 7.095 18 H 0.301 0.699 19 H 0.065 0.935 20 H 0.073 0.927 21 H 0.117 0.883 22 H 0.141 0.859 23 H 0.152 0.848 24 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.413 0.018 -1.771 8.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.187 4.187 3 Si 0.804 3.196 4 H -0.174 1.174 5 H -0.185 1.185 6 H -0.183 1.183 7 C -0.472 4.472 8 H 0.106 0.894 9 C 0.035 3.965 10 C -0.449 4.449 11 C 0.040 3.960 12 C -0.171 4.171 13 C -0.129 4.129 14 C -0.183 4.183 15 C -0.123 4.123 16 C -0.130 4.130 17 Cl -0.066 7.066 18 H 0.112 0.888 19 H 0.084 0.916 20 H 0.091 0.909 21 H 0.135 0.865 22 H 0.159 0.841 23 H 0.170 0.830 24 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.099 0.058 -1.665 8.268 hybrid contribution -0.515 0.218 0.310 0.639 sum 7.584 0.276 -1.356 7.709 Atomic orbital electron populations 1.69528 1.09551 1.32399 1.32780 1.27304 0.95594 1.05686 0.90081 0.85183 0.78945 0.74687 0.80794 1.17358 1.18497 1.18277 1.20070 0.96047 0.91272 1.39833 0.89366 1.20473 0.95411 0.92861 0.87717 1.20890 0.94331 0.95282 1.34389 1.18908 0.93351 0.91826 0.91935 1.21520 0.96528 1.00247 0.98815 1.21338 0.92814 0.99013 0.99694 1.21193 1.00725 0.96035 1.00298 1.21045 0.92704 0.99958 0.98579 1.21374 0.94644 0.96595 1.00401 1.98250 1.90203 1.54867 1.63316 0.88829 0.91644 0.90873 0.86527 0.84111 0.82991 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.51 12.88 21.95 0.28 -40.23 14 2 C 0.03 1.55 5.51 85.47 0.47 2.02 14 3 Si 0.98 35.75 29.57 68.60 2.03 37.78 14 4 H -0.25 -8.70 7.11 99.48 0.71 -7.99 14 5 H -0.26 -8.79 7.11 99.48 0.71 -8.08 14 6 H -0.26 -9.31 7.11 99.48 0.71 -8.60 14 7 C -0.45 -23.11 7.02 22.99 0.16 -22.95 14 8 H 0.09 4.53 5.46 -2.91 -0.02 4.51 14 9 C 0.06 3.09 9.36 22.40 0.21 3.30 14 10 C -0.43 -22.42 9.17 24.35 0.22 -22.19 14 11 C 0.04 1.93 5.28 -20.12 -0.11 1.83 14 12 C -0.15 -6.65 7.53 22.66 0.17 -6.47 14 13 C -0.11 -3.87 10.02 22.22 0.22 -3.65 14 14 C -0.16 -5.19 10.04 22.41 0.23 -4.97 14 15 C -0.10 -3.65 9.81 22.25 0.22 -3.43 14 16 C -0.10 -4.39 6.37 22.74 0.14 -4.24 14 17 Cl -0.09 -3.77 27.86 -2.72 -0.08 -3.85 14 18 H 0.30 13.19 8.29 -92.71 -0.77 12.42 14 19 H 0.07 3.72 7.45 -2.91 -0.02 3.70 14 20 H 0.07 3.86 7.75 -2.91 -0.02 3.84 14 21 H 0.12 5.36 6.53 -2.91 -0.02 5.34 14 22 H 0.14 3.96 8.06 -2.91 -0.02 3.93 14 23 H 0.15 3.54 8.06 -2.91 -0.02 3.52 14 24 H 0.14 4.04 8.06 -2.91 -0.02 4.01 14 Total: -1.00 -55.82 231.39 5.38 -50.44 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 1.20 Total: 16.60 kcal Atomic # 6 Polarization: -62.69 SS G_CDS: 1.94 Total: -60.75 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.28 Total: -40.23 kcal Atomic # 14 Polarization: 35.75 SS G_CDS: 2.03 Total: 37.78 kcal Atomic # 17 Polarization: -3.77 SS G_CDS: -0.08 Total: -3.85 kcal Total: -55.82 5.38 -50.44 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260384629.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.691 kcal (2) G-P(sol) polarization free energy of solvation -55.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds