Wall clock time and date at job start Mon Mar 30 2020 02:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86800 * 119.99973 * 2 1 4 4 H 1.48500 * 109.47350 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46833 * 300.00140 * 3 2 1 6 6 H 1.48509 * 109.47254 * 59.99697 * 3 2 1 7 7 C 1.40064 * 120.00431 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00436 * 179.72447 * 7 2 1 9 9 C 1.40065 * 119.99717 * 0.02562 * 7 2 1 10 10 C 1.36907 * 125.09718 * 179.44473 * 9 7 2 11 11 C 1.40639 * 113.74100 * 179.79940 * 10 9 7 12 12 C 1.37485 * 113.13579 * 0.48412 * 11 10 9 13 13 S 1.71405 * 111.15010 * 359.73555 * 12 11 10 14 14 C 1.51992 * 109.88407 * 179.72051 * 12 11 10 15 15 C 1.53238 * 106.11085 * 359.97438 * 14 12 11 16 16 C 1.48051 * 136.23725 * 180.09923 * 11 10 9 17 17 O 1.21332 * 125.90371 * 0.35730 * 16 11 10 18 18 H 0.96995 * 120.00201 * 0.02562 * 1 2 3 19 19 H 1.07997 * 123.13184 * 359.96761 * 10 9 7 20 20 H 1.08999 * 110.12868 * 119.15885 * 14 12 11 21 21 H 1.09007 * 110.11969 * 240.83498 * 14 12 11 22 22 H 1.09000 * 110.30283 * 241.07642 * 15 14 12 23 23 H 1.08998 * 110.38288 * 118.97309 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.7026 1.3465 0.0006 5 1 1.8838 2.3964 -1.2125 6 1 1.8838 2.3965 1.2125 7 6 2.0090 -1.2129 0.0005 8 1 3.0889 -1.2129 -0.0040 9 6 1.3087 -2.4260 0.0005 10 6 1.8852 -3.6677 -0.0098 11 6 0.9560 -4.7234 -0.0027 12 6 -0.3499 -4.2936 0.0025 13 16 -0.4376 -2.5818 0.0062 14 6 -1.2878 -5.4896 0.0030 15 6 -0.3917 -6.7327 -0.0034 16 6 1.0182 -6.2026 -0.0063 17 8 2.0301 -6.8722 -0.0115 18 1 -0.4850 0.8400 -0.0004 19 1 2.9540 -3.8222 -0.0196 20 1 -1.9087 -5.4791 0.8988 21 1 -1.9146 -5.4750 -0.8887 22 1 -0.5749 -7.3264 -0.8989 23 1 -0.5679 -7.3323 0.8897 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260535991.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:09 Heat of formation + Delta-G solvation = -50.720293 kcal Electronic energy + Delta-G solvation = -10930.593286 eV Core-core repulsion = 8833.497851 eV Total energy + Delta-G solvation = -2097.095435 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.030 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.63910 -37.80730 -36.32828 -34.22071 -30.10780 -27.33168 -26.27122 -22.94311 -21.64317 -19.30108 -19.23960 -17.29620 -16.78541 -16.56400 -15.84997 -15.27242 -14.74675 -14.31460 -13.82819 -13.62537 -13.38128 -13.04636 -12.83564 -12.33334 -12.24255 -12.00271 -11.95487 -11.21105 -11.20043 -10.42199 -9.40151 -8.85838 -8.82335 -6.50525 0.21791 0.96867 1.36909 1.38468 1.54939 1.57260 1.97596 2.19015 2.34291 3.05680 3.40121 3.90247 4.27081 4.32895 4.74457 4.87681 4.95881 5.02265 5.15996 5.18526 5.44284 5.64956 5.86909 6.12583 6.40000 6.63332 6.71577 8.06707 Molecular weight = 208.03amu Principal moments of inertia in cm(-1) A = 0.064534 B = 0.009683 C = 0.008472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.775146 B = 2891.080356 C = 3304.307971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.020 3.980 3 Si 1.009 2.991 4 H -0.263 1.263 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.431 4.431 8 H 0.087 0.913 9 C -0.022 4.022 10 C -0.334 4.334 11 C -0.203 4.203 12 C -0.351 4.351 13 S 0.259 5.741 14 C -0.021 4.021 15 C -0.149 4.149 16 C 0.408 3.592 17 O -0.518 6.518 18 H 0.311 0.689 19 H 0.084 0.916 20 H 0.094 0.906 21 H 0.094 0.906 22 H 0.128 0.872 23 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.993 -0.522 0.023 6.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.196 4.196 3 Si 0.828 3.172 4 H -0.186 1.186 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.467 4.467 8 H 0.105 0.895 9 C -0.141 4.141 10 C -0.358 4.358 11 C -0.216 4.216 12 C -0.470 4.470 13 S 0.524 5.476 14 C -0.060 4.060 15 C -0.187 4.187 16 C 0.290 3.710 17 O -0.400 6.400 18 H 0.124 0.876 19 H 0.102 0.898 20 H 0.112 0.888 21 H 0.112 0.888 22 H 0.146 0.854 23 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.890 0.275 0.026 6.895 hybrid contribution 2.106 -0.380 -0.011 2.140 sum -4.784 -0.105 0.015 4.785 Atomic orbital electron populations 1.68607 1.08572 1.32297 1.34951 1.27020 0.95959 1.05208 0.91452 0.84714 0.78631 0.74319 0.79579 1.18632 1.18144 1.18142 1.19409 0.95501 0.89641 1.42122 0.89475 1.21921 0.97129 0.96069 0.99023 1.19778 0.97122 0.91277 1.27577 1.21043 0.94612 0.95653 1.10341 1.27095 0.99095 1.04529 1.16321 1.83260 1.02931 0.90312 1.71108 1.20344 0.95096 0.86739 1.03830 1.22198 0.90445 0.99383 1.06718 1.23319 0.91725 0.87742 0.68185 1.90407 1.40056 1.67207 1.42282 0.87574 0.89794 0.88797 0.88799 0.85395 0.85395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -37.87 10.62 21.85 0.23 -37.64 14 2 C 0.02 0.92 5.50 85.28 0.47 1.39 14 3 Si 1.01 35.24 29.56 68.60 2.03 37.26 14 4 H -0.26 -9.28 7.11 99.48 0.71 -8.58 14 5 H -0.26 -8.45 7.11 99.48 0.71 -7.75 14 6 H -0.26 -8.45 7.11 99.48 0.71 -7.75 14 7 C -0.43 -22.82 9.28 23.16 0.21 -22.60 14 8 H 0.09 4.54 7.85 -2.92 -0.02 4.52 14 9 C -0.02 -1.21 6.12 22.40 0.14 -1.08 14 10 C -0.33 -18.78 10.31 22.54 0.23 -18.55 14 11 C -0.20 -10.18 6.50 -20.27 -0.13 -10.31 14 12 C -0.35 -15.53 7.24 25.92 0.19 -15.34 14 13 S 0.26 12.38 19.97 -56.49 -1.13 11.25 14 14 C -0.02 -0.65 6.84 30.34 0.21 -0.45 14 15 C -0.15 -4.41 6.85 29.91 0.20 -4.21 14 16 C 0.41 17.90 7.78 28.27 0.22 18.12 14 17 O -0.52 -25.54 18.03 -3.19 -0.06 -25.60 14 18 H 0.31 12.62 8.30 -92.71 -0.77 11.85 14 19 H 0.08 4.86 8.06 -2.91 -0.02 4.84 14 20 H 0.09 2.46 8.14 -2.39 -0.02 2.44 14 21 H 0.09 2.46 8.14 -2.38 -0.02 2.44 14 22 H 0.13 3.04 8.14 -2.39 -0.02 3.02 14 23 H 0.13 3.04 8.14 -2.39 -0.02 3.02 14 Total: -1.00 -63.73 222.69 4.04 -59.68 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.23 Total: 8.06 kcal Atomic # 6 Polarization: -54.76 SS G_CDS: 1.74 Total: -53.02 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.23 Total: -37.64 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.06 Total: -25.60 kcal Atomic # 14 Polarization: 35.24 SS G_CDS: 2.03 Total: 37.26 kcal Atomic # 16 Polarization: 12.38 SS G_CDS: -1.13 Total: 11.25 kcal Total: -63.73 4.04 -59.68 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260535991.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.961 kcal (2) G-P(sol) polarization free energy of solvation -63.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds