Wall clock time and date at job start Mon Mar 30 2020 02:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40891 * 126.29100 * 2 1 4 4 C 1.34851 * 107.41570 * 179.97438 * 3 2 1 5 5 C 1.50703 * 125.88627 * 180.02562 * 4 3 2 6 6 N 1.36336 * 108.22152 * 359.97438 * 4 3 2 7 7 C 1.46498 * 125.63855 * 179.97438 * 6 4 3 8 8 C 1.34849 * 126.29089 * 179.68194 * 2 1 3 9 9 C 1.50701 * 125.89261 * 0.02562 * 8 2 1 10 10 C 1.52997 * 109.47112 * 270.02165 * 9 8 2 11 11 C 1.50694 * 109.47171 * 179.97438 * 10 9 8 12 12 H 1.08006 * 120.00275 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00246 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00126 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00194 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47208 * 90.00020 * 15 13 11 17 17 H 1.48499 * 109.47270 * 210.00289 * 15 13 11 18 18 H 1.48499 * 109.47316 * 330.00258 * 15 13 11 19 19 H 1.09002 * 109.47152 * 90.02772 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.02873 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.02853 * 1 2 3 22 22 H 1.08003 * 126.28935 * 359.97438 * 3 2 1 23 23 H 1.09001 * 109.47146 * 89.97666 * 5 4 3 24 24 H 1.09002 * 109.47161 * 209.97024 * 5 4 3 25 25 H 1.09000 * 109.47572 * 329.97442 * 5 4 3 26 26 H 1.09002 * 109.47062 * 90.02309 * 7 6 4 27 27 H 1.08996 * 109.47112 * 210.02807 * 7 6 4 28 28 H 1.09000 * 109.46813 * 330.02409 * 7 6 4 29 29 H 1.09007 * 109.47110 * 30.02436 * 9 8 2 30 30 H 1.09001 * 109.46932 * 150.02065 * 9 8 2 31 31 H 1.08994 * 109.47410 * 299.99901 * 10 9 8 32 32 H 1.09010 * 109.47094 * 59.99989 * 10 9 8 33 33 H 0.96992 * 120.00332 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.1356 0.0000 4 6 3.6169 0.6994 0.0006 5 6 4.8478 1.5689 0.0013 6 7 3.6014 -0.6639 0.0015 7 6 4.7822 -1.5310 0.0018 8 6 2.3052 -1.0869 0.0060 9 6 1.8441 -2.5216 0.0135 10 6 1.6870 -2.9993 1.4584 11 6 1.2253 -4.4338 1.4658 12 1 1.0608 -4.9530 0.5332 13 6 1.0139 -5.0838 2.6632 14 7 1.2147 -4.4519 3.7990 15 14 0.4409 -6.8617 2.6724 16 1 1.6217 -7.7624 2.6770 17 1 -0.3772 -7.1119 3.8862 18 1 -0.3772 -7.1245 1.4613 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3633 0.8903 0.5134 21 1 -0.3633 -0.8898 0.5143 22 1 2.0176 2.1661 -0.0004 23 1 5.1438 1.7787 1.0292 24 1 5.6585 1.0515 -0.5117 25 1 4.6315 2.5053 -0.5128 26 1 5.0750 -1.7457 1.0296 27 1 4.5483 -2.4636 -0.5117 28 1 5.6018 -1.0289 -0.5122 29 1 0.8859 -2.5980 -0.5007 30 1 2.5806 -3.1426 -0.4965 31 1 2.6450 -2.9230 1.9725 32 1 0.9504 -2.3783 1.9684 33 1 1.0664 -4.9092 4.6413 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260635321.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:26 Heat of formation + Delta-G solvation = 2.147427 kcal Electronic energy + Delta-G solvation = -13410.135154 eV Core-core repulsion = 11241.964216 eV Total energy + Delta-G solvation = -2168.170938 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.20135 -36.01767 -34.54571 -33.81956 -31.67396 -29.73125 -28.06599 -26.29953 -24.85697 -22.65308 -20.76699 -19.27118 -18.51056 -16.94980 -16.61813 -16.20805 -15.35400 -14.93750 -14.33978 -14.10474 -13.88256 -13.84788 -13.64518 -13.51027 -13.20064 -12.94524 -12.84530 -12.70040 -12.50167 -12.36433 -12.05219 -11.77723 -11.56235 -11.19510 -10.57689 -9.23577 -8.53703 -8.19419 -6.33642 1.38116 1.40952 1.41569 1.53072 2.09801 2.19187 2.40778 3.11964 4.00535 4.04779 4.22544 4.29754 4.36771 4.52006 4.61899 4.64743 4.77134 4.80379 4.86474 4.91541 4.97709 5.08539 5.12748 5.24427 5.37604 5.47431 5.64704 5.72120 5.81727 6.19334 6.31279 6.45909 6.66733 6.83959 7.36176 8.91035 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.043834 B = 0.007660 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.624945 B = 3654.285011 C = 3959.251915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.196 4.196 3 C -0.218 4.218 4 C -0.001 4.001 5 C -0.073 4.073 6 N -0.451 5.451 7 C 0.068 3.932 8 C 0.005 3.995 9 C -0.030 4.030 10 C 0.046 3.954 11 C -0.544 4.544 12 H 0.064 0.936 13 C 0.000 4.000 14 N -0.934 5.934 15 Si 0.968 3.032 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.261 1.261 19 H 0.068 0.932 20 H 0.067 0.933 21 H 0.040 0.960 22 H 0.147 0.853 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.060 0.940 31 H -0.018 1.018 32 H -0.014 1.014 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.235 8.805 -8.683 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.203 4.203 3 C -0.243 4.243 4 C -0.112 4.112 5 C -0.130 4.130 6 N -0.128 5.128 7 C -0.073 4.073 8 C -0.107 4.107 9 C -0.068 4.068 10 C 0.009 3.991 11 C -0.581 4.581 12 H 0.082 0.918 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.792 3.208 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.185 1.185 19 H 0.087 0.913 20 H 0.086 0.914 21 H 0.059 0.941 22 H 0.165 0.835 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.112 0.888 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.131 0.869 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.001 0.999 32 H 0.004 0.996 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.548 8.561 -8.512 13.734 hybrid contribution -0.399 -0.972 0.582 1.201 sum 6.149 7.589 -7.929 12.581 Atomic orbital electron populations 1.20069 0.90003 1.01371 1.01456 1.19635 0.96233 0.92671 1.11723 1.20762 0.91720 0.98364 1.13411 1.20926 0.97999 0.82450 1.09858 1.20342 0.91723 0.97941 1.03037 1.44009 1.05816 1.06234 1.56714 1.22113 0.86681 0.95153 1.03311 1.20531 0.83718 0.96309 1.10093 1.20013 1.00149 0.88325 0.98325 1.18800 0.94279 0.94668 0.91400 1.21679 1.45411 0.98160 0.92888 0.91780 1.26014 0.95437 1.03200 0.95107 1.70124 1.50273 1.38967 0.98057 0.85410 0.78551 0.78906 0.77959 1.19596 1.20822 1.18528 0.91302 0.91359 0.94075 0.83483 0.90879 0.90574 0.88777 0.91823 0.90065 0.86882 0.91097 0.92173 0.99940 0.99593 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.51 9.98 71.24 0.71 -1.80 16 2 C -0.20 -7.69 6.14 -19.99 -0.12 -7.82 16 3 C -0.22 -7.42 10.71 22.14 0.24 -7.18 16 4 C 0.00 -0.03 6.89 41.08 0.28 0.25 16 5 C -0.07 -1.50 10.10 71.24 0.72 -0.78 16 6 N -0.45 -15.95 3.15 -518.69 -1.63 -17.58 16 7 C 0.07 1.91 10.72 127.77 1.37 3.28 16 8 C 0.00 0.20 6.14 41.08 0.25 0.45 16 9 C -0.03 -1.34 4.98 29.85 0.15 -1.19 16 10 C 0.05 2.55 4.95 29.85 0.15 2.69 16 11 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 12 H 0.06 3.52 7.74 -2.91 -0.02 3.49 16 13 C 0.00 0.01 5.46 84.65 0.46 0.47 16 14 N -0.93 -58.15 13.29 21.45 0.28 -57.87 16 15 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 18 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 19 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 20 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 21 H 0.04 1.61 7.75 -2.38 -0.02 1.59 16 22 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 23 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.08 1.28 7.05 -2.39 -0.02 1.26 16 25 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.08 2.28 7.03 -2.39 -0.02 2.26 16 28 H 0.11 2.20 7.02 -2.39 -0.02 2.19 16 29 H 0.07 3.10 7.75 -2.38 -0.02 3.08 16 30 H 0.06 2.52 7.05 -2.39 -0.02 2.50 16 31 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 32 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 33 H 0.26 15.36 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -69.86 277.24 6.18 -63.67 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 1.06 Total: 8.06 kcal Atomic # 6 Polarization: -47.31 SS G_CDS: 4.44 Total: -42.87 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -1.35 Total: -75.45 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -69.86 6.18 -63.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260635321.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.820 kcal (2) G-P(sol) polarization free energy of solvation -69.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds