Wall clock time and date at job start Mon Mar 30 2020 02:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.69987 * 2 1 4 4 N 1.47325 * 109.69924 * 239.39091 * 2 1 3 5 5 C 1.46944 * 111.39531 * 189.28578 * 4 2 1 6 6 C 1.53503 * 109.67794 * 71.30348 * 5 4 2 7 7 C 1.50961 * 107.86821 * 310.72971 * 6 5 4 8 8 N 1.33462 * 128.75626 * 196.09112 * 7 6 5 9 9 C 1.30809 * 109.27171 * 179.75966 * 8 7 6 10 10 N 1.36597 * 108.59277 * 0.02562 * 9 8 7 11 11 C 1.37567 * 126.61202 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99686 * 156.38128 * 11 10 9 13 13 C 1.38941 * 119.99878 * 336.37883 * 11 10 9 14 14 N 1.31323 * 119.99855 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99829 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47224 * 60.00029 * 15 13 11 17 17 H 1.48503 * 109.47073 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47250 * 300.00054 * 15 13 11 19 19 C 1.35236 * 122.98126 * 15.91522 * 7 6 5 20 20 H 1.09004 * 109.47022 * 306.21631 * 1 2 3 21 21 H 1.08997 * 109.47210 * 66.21366 * 1 2 3 22 22 H 1.09002 * 109.47147 * 186.22201 * 1 2 3 23 23 H 1.00907 * 110.99833 * 313.52615 * 4 2 1 24 24 H 1.08991 * 109.43708 * 311.23846 * 5 4 2 25 25 H 1.09004 * 109.40524 * 191.34117 * 5 4 2 26 26 H 1.08995 * 109.77833 * 191.13702 * 6 5 4 27 27 H 1.08993 * 109.77975 * 70.31924 * 6 5 4 28 28 H 1.07994 * 125.70439 * 179.97438 * 9 8 7 29 29 H 0.97008 * 119.99950 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 7 2.0266 -0.7062 -1.1938 5 6 3.4786 -0.9215 -1.1240 6 6 3.7929 -1.9860 -0.0637 7 6 3.0516 -1.6160 1.1982 8 7 3.2418 -2.0642 2.4408 9 6 2.3879 -1.4844 3.2444 10 7 1.6122 -0.6305 2.5129 11 6 0.5970 0.1669 2.9882 12 1 0.3079 1.0543 2.4447 13 6 -0.0564 -0.1693 4.1674 14 7 0.2955 -1.2481 4.8284 15 14 -1.4354 0.9131 4.8124 16 1 -2.5246 0.9800 3.8052 17 1 -1.9640 0.3406 6.0766 18 1 -0.9136 2.2796 5.0685 19 6 2.0378 -0.7213 1.2209 20 1 -0.3633 0.6072 0.8291 21 1 -0.3633 0.4145 -0.9403 22 1 -0.3633 -1.0216 0.1114 23 1 1.5377 -1.5788 -1.3272 24 1 3.9713 0.0132 -0.8567 25 1 3.8418 -1.2583 -2.0949 26 1 4.8651 -2.0072 0.1311 27 1 3.4613 -2.9638 -0.4131 28 1 2.3087 -1.6532 4.3081 29 1 -0.1604 -1.4827 5.6519 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260815105.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:37 Heat of formation + Delta-G solvation = 47.189889 kcal Electronic energy + Delta-G solvation = -13847.945177 eV Core-core repulsion = 11578.187083 eV Total energy + Delta-G solvation = -2269.758094 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.74333 -36.69485 -34.15924 -32.23735 -30.14158 -28.57818 -26.46332 -24.89635 -22.02074 -21.69669 -20.07727 -18.28451 -17.55671 -15.56811 -14.68619 -14.49565 -14.39653 -13.92811 -13.19540 -13.09443 -12.57250 -12.26029 -11.79985 -11.73699 -11.37330 -11.30765 -10.93255 -10.72588 -10.67920 -10.49524 -10.31585 -9.55066 -8.54153 -8.30119 -8.00420 -6.86929 -6.64937 -4.56876 2.90063 2.98208 3.01321 3.55661 3.77919 4.48748 4.73913 4.89612 4.98291 5.49053 5.76156 5.79184 5.93162 5.98673 6.07756 6.30960 6.36211 6.50019 6.57491 6.64378 6.78302 7.00337 7.05108 7.29991 7.38964 7.56800 7.86818 8.17722 8.42264 8.70051 9.44301 9.76132 10.22063 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.044294 B = 0.012005 C = 0.009794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.981517 B = 2331.818871 C = 2858.116828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.178 3.822 3 H 0.073 0.927 4 N -0.675 5.675 5 C 0.062 3.938 6 C -0.055 4.055 7 C -0.046 4.046 8 N -0.529 5.529 9 C 0.151 3.849 10 N -0.252 5.252 11 C -0.341 4.341 12 H 0.109 0.891 13 C 0.047 3.953 14 N -0.846 5.846 15 Si 0.942 3.058 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.266 1.266 19 C -0.125 4.125 20 H 0.074 0.926 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.338 0.662 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.204 0.796 29 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.683 2.547 -5.849 6.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.067 3.933 3 H 0.091 0.909 4 N -0.304 5.304 5 C -0.068 4.068 6 C -0.095 4.095 7 C -0.182 4.182 8 N -0.248 5.248 9 C -0.127 4.127 10 N 0.084 4.916 11 C -0.470 4.470 12 H 0.126 0.874 13 C -0.163 4.163 14 N -0.477 5.477 15 Si 0.766 3.234 16 H -0.191 1.191 17 H -0.201 1.201 18 H -0.191 1.191 19 C -0.250 4.250 20 H 0.092 0.908 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.155 0.845 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.220 0.780 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.254 2.537 -5.658 6.206 hybrid contribution -1.222 0.167 1.094 1.648 sum -1.476 2.704 -4.564 5.507 Atomic orbital electron populations 1.21881 0.94421 1.02391 1.01463 1.19651 0.94353 0.95718 0.83539 0.90917 1.61087 1.04493 1.27278 1.37497 1.22016 0.88978 0.98468 0.97326 1.20435 0.99173 0.98214 0.91712 1.19875 1.01444 1.03067 0.93775 1.69707 1.26069 1.28048 1.01001 1.25302 0.91599 0.96857 0.98986 1.41202 1.20469 1.25683 1.04227 1.19880 1.11990 1.06893 1.08220 0.87378 1.25581 0.98535 0.96133 0.96056 1.69779 1.39754 1.22424 1.15766 0.85753 0.79686 0.79477 0.78524 1.19081 1.20130 1.19085 1.21328 1.06285 1.09726 0.87680 0.90756 0.92971 0.93095 0.84524 0.91325 0.91007 0.91735 0.92446 0.77956 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.86 37.16 0.33 -2.34 15 2 C 0.18 3.56 3.39 -68.67 -0.23 3.32 15 3 H 0.07 1.45 8.14 -51.93 -0.42 1.03 15 4 N -0.68 -11.69 6.60 -107.37 -0.71 -12.40 15 5 C 0.06 1.02 6.54 -3.54 -0.02 1.00 15 6 C -0.06 -1.06 6.43 -27.49 -0.18 -1.23 15 7 C -0.05 -1.12 7.07 -82.83 -0.59 -1.70 15 8 N -0.53 -14.37 11.24 -10.37 -0.12 -14.49 15 9 C 0.15 4.19 11.28 -88.68 -1.00 3.19 15 10 N -0.25 -6.72 2.91 -58.89 -0.17 -6.89 15 11 C -0.34 -8.68 8.69 -14.72 -0.13 -8.81 15 12 H 0.11 2.58 6.27 -52.49 -0.33 2.25 15 13 C 0.05 1.15 5.45 -17.51 -0.10 1.05 15 14 N -0.85 -21.86 10.78 55.49 0.60 -21.26 15 15 Si 0.94 18.58 29.55 -169.99 -5.02 13.56 15 16 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 17 H -0.28 -5.39 7.11 56.52 0.40 -4.99 15 18 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 19 C -0.13 -3.05 6.24 -81.70 -0.51 -3.56 15 20 H 0.07 1.45 5.54 -51.93 -0.29 1.16 15 21 H 0.05 0.83 8.14 -51.93 -0.42 0.40 15 22 H 0.05 1.00 8.14 -51.93 -0.42 0.57 15 23 H 0.34 5.70 8.58 -39.29 -0.34 5.36 15 24 H 0.07 1.15 8.07 -51.93 -0.42 0.73 15 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 26 H 0.06 1.18 8.14 -51.93 -0.42 0.75 15 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 28 H 0.20 5.65 6.33 -52.49 -0.33 5.32 15 29 H 0.28 6.74 8.31 -40.82 -0.34 6.40 15 LS Contribution 238.28 15.07 3.59 3.59 Total: -1.00 -28.67 238.28 -7.63 -36.30 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -3.38 Total: 10.66 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -2.42 Total: -9.07 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -0.40 Total: -55.03 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -28.67 -7.63 -36.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260815105.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.487 kcal (2) G-P(sol) polarization free energy of solvation -28.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds