Wall clock time and date at job start Mon Mar 30 2020 02:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.69987 * 2 1 4 4 N 1.47325 * 109.69924 * 239.39091 * 2 1 3 5 5 C 1.46944 * 111.39531 * 189.28578 * 4 2 1 6 6 C 1.53503 * 109.67794 * 71.30348 * 5 4 2 7 7 C 1.50961 * 107.86821 * 310.72971 * 6 5 4 8 8 N 1.33462 * 128.75626 * 196.09112 * 7 6 5 9 9 C 1.30809 * 109.27171 * 179.75966 * 8 7 6 10 10 N 1.36597 * 108.59277 * 0.02562 * 9 8 7 11 11 C 1.37567 * 126.61202 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99686 * 156.38128 * 11 10 9 13 13 C 1.38941 * 119.99878 * 336.37883 * 11 10 9 14 14 N 1.31323 * 119.99855 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99829 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47224 * 60.00029 * 15 13 11 17 17 H 1.48503 * 109.47073 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47250 * 300.00054 * 15 13 11 19 19 C 1.35236 * 122.98126 * 15.91522 * 7 6 5 20 20 H 1.09004 * 109.47022 * 306.21631 * 1 2 3 21 21 H 1.08997 * 109.47210 * 66.21366 * 1 2 3 22 22 H 1.09002 * 109.47147 * 186.22201 * 1 2 3 23 23 H 1.00907 * 110.99833 * 313.52615 * 4 2 1 24 24 H 1.08991 * 109.43708 * 311.23846 * 5 4 2 25 25 H 1.09004 * 109.40524 * 191.34117 * 5 4 2 26 26 H 1.08995 * 109.77833 * 191.13702 * 6 5 4 27 27 H 1.08993 * 109.77975 * 70.31924 * 6 5 4 28 28 H 1.07994 * 125.70439 * 179.97438 * 9 8 7 29 29 H 0.97008 * 119.99950 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 7 2.0266 -0.7062 -1.1938 5 6 3.4786 -0.9215 -1.1240 6 6 3.7929 -1.9860 -0.0637 7 6 3.0516 -1.6160 1.1982 8 7 3.2418 -2.0642 2.4408 9 6 2.3879 -1.4844 3.2444 10 7 1.6122 -0.6305 2.5129 11 6 0.5970 0.1669 2.9882 12 1 0.3079 1.0543 2.4447 13 6 -0.0564 -0.1693 4.1674 14 7 0.2955 -1.2481 4.8284 15 14 -1.4354 0.9131 4.8124 16 1 -2.5246 0.9800 3.8052 17 1 -1.9640 0.3406 6.0766 18 1 -0.9136 2.2796 5.0685 19 6 2.0378 -0.7213 1.2209 20 1 -0.3633 0.6072 0.8291 21 1 -0.3633 0.4145 -0.9403 22 1 -0.3633 -1.0216 0.1114 23 1 1.5377 -1.5788 -1.3272 24 1 3.9713 0.0132 -0.8567 25 1 3.8418 -1.2583 -2.0949 26 1 4.8651 -2.0072 0.1311 27 1 3.4613 -2.9638 -0.4131 28 1 2.3087 -1.6532 4.3081 29 1 -0.1604 -1.4827 5.6519 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260815105.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:37 Heat of formation + Delta-G solvation = 28.471514 kcal Electronic energy + Delta-G solvation = -13848.756867 eV Core-core repulsion = 11578.187083 eV Total energy + Delta-G solvation = -2270.569784 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.64089 -38.24544 -36.04207 -33.96572 -31.91299 -30.23197 -28.22215 -26.70764 -23.54066 -23.40414 -21.98828 -20.03553 -19.43560 -17.42301 -16.30803 -16.07872 -15.95881 -15.70139 -14.98919 -14.74067 -14.16689 -13.94227 -13.51420 -13.42006 -13.06958 -12.90827 -12.45054 -12.28423 -12.20687 -12.12543 -11.82609 -11.35513 -10.47924 -10.27342 -9.50560 -8.75027 -8.55394 -6.54923 1.27782 1.36307 1.50712 1.75438 2.10739 2.52414 2.94371 3.09507 3.35510 3.97918 4.22086 4.27806 4.35921 4.45005 4.54687 4.80952 4.91729 4.94978 4.98976 5.04710 5.15389 5.22079 5.37614 5.46541 5.57527 6.02005 6.27976 6.47372 6.48599 6.78451 7.46638 7.78160 8.36041 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.044294 B = 0.012005 C = 0.009794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.981517 B = 2331.818871 C = 2858.116828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.180 3.820 3 H 0.076 0.924 4 N -0.661 5.661 5 C 0.068 3.932 6 C -0.053 4.053 7 C -0.065 4.065 8 N -0.553 5.553 9 C 0.113 3.887 10 N -0.261 5.261 11 C -0.366 4.366 12 H 0.122 0.878 13 C 0.003 3.997 14 N -0.879 5.879 15 Si 1.016 2.984 16 H -0.255 1.255 17 H -0.274 1.274 18 H -0.257 1.257 19 C -0.136 4.136 20 H 0.061 0.939 21 H 0.084 0.916 22 H 0.034 0.966 23 H 0.343 0.657 24 H 0.065 0.935 25 H 0.113 0.887 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.189 0.811 29 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.537 3.648 -7.566 8.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.069 3.931 3 H 0.094 0.906 4 N -0.289 5.289 5 C -0.062 4.062 6 C -0.093 4.093 7 C -0.201 4.201 8 N -0.273 5.273 9 C -0.164 4.164 10 N 0.075 4.925 11 C -0.494 4.494 12 H 0.139 0.861 13 C -0.203 4.203 14 N -0.511 5.511 15 Si 0.835 3.165 16 H -0.179 1.179 17 H -0.198 1.198 18 H -0.181 1.181 19 C -0.261 4.261 20 H 0.080 0.920 21 H 0.103 0.897 22 H 0.053 0.947 23 H 0.160 0.840 24 H 0.084 0.916 25 H 0.131 0.869 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.206 0.794 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.091 3.628 -7.395 8.309 hybrid contribution -0.900 -0.220 1.612 1.860 sum -1.991 3.408 -5.783 7.001 Atomic orbital electron populations 1.21777 0.93380 1.01362 1.02661 1.19766 0.95218 0.95601 0.82524 0.90647 1.61122 1.05149 1.27423 1.35240 1.22115 0.88246 0.97506 0.98292 1.20618 0.98991 0.99702 0.90006 1.20846 1.02002 1.02794 0.94481 1.69671 1.26427 1.28806 1.02437 1.25115 0.93314 0.99085 0.98934 1.41467 1.20468 1.25458 1.05115 1.20384 1.12142 1.07626 1.09224 0.86079 1.26707 1.00741 0.97235 0.95645 1.69905 1.40907 1.24052 1.16213 0.84658 0.76300 0.77589 0.77917 1.17864 1.19818 1.18091 1.22225 1.06002 1.09741 0.88142 0.91976 0.89749 0.94666 0.83987 0.91618 0.86862 0.91010 0.91405 0.79444 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 8.86 71.98 0.64 -4.09 15 2 C 0.18 6.87 3.39 44.07 0.15 7.02 15 3 H 0.08 2.86 8.14 -2.39 -0.02 2.84 15 4 N -0.66 -20.87 6.60 -493.61 -3.26 -24.13 15 5 C 0.07 2.01 6.54 86.46 0.57 2.57 15 6 C -0.05 -1.93 6.43 30.10 0.19 -1.74 15 7 C -0.07 -3.20 7.07 41.70 0.29 -2.91 15 8 N -0.55 -30.89 11.24 -186.72 -2.10 -32.98 15 9 C 0.11 6.54 11.28 179.67 2.03 8.56 15 10 N -0.26 -14.19 2.91 -340.22 -0.99 -15.18 15 11 C -0.37 -18.74 8.69 83.96 0.73 -18.01 15 12 H 0.12 5.71 6.27 -2.91 -0.02 5.70 15 13 C 0.00 0.15 5.45 84.94 0.46 0.62 15 14 N -0.88 -46.53 10.78 21.65 0.23 -46.29 15 15 Si 1.02 37.38 29.55 68.60 2.03 39.41 15 16 H -0.25 -8.86 7.11 99.48 0.71 -8.16 15 17 H -0.27 -9.84 7.11 99.48 0.71 -9.14 15 18 H -0.26 -9.02 7.11 99.48 0.71 -8.31 15 19 C -0.14 -6.61 6.24 41.14 0.26 -6.35 15 20 H 0.06 2.33 5.54 -2.39 -0.01 2.32 15 21 H 0.08 2.41 8.14 -2.39 -0.02 2.39 15 22 H 0.03 1.32 8.14 -2.39 -0.02 1.30 15 23 H 0.34 10.53 8.58 -89.69 -0.77 9.76 15 24 H 0.07 2.00 8.07 -2.39 -0.02 1.98 15 25 H 0.11 2.48 8.14 -2.39 -0.02 2.46 15 26 H 0.07 2.49 8.14 -2.39 -0.02 2.47 15 27 H 0.07 2.32 8.14 -2.39 -0.02 2.30 15 28 H 0.19 11.13 6.33 -2.91 -0.02 11.11 15 29 H 0.29 13.97 8.31 -92.70 -0.77 13.20 15 Total: -1.00 -62.92 238.28 1.63 -61.29 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.40 Total: 32.21 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 5.32 Total: -14.32 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -6.11 Total: -118.58 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Total: -62.92 1.63 -61.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260815105.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.762 kcal (2) G-P(sol) polarization free energy of solvation -62.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds