Wall clock time and date at job start Mon Mar 30 2020 02:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35976 * 125.47566 * 2 1 4 4 C 1.39305 * 108.08956 * 180.10570 * 3 2 1 5 5 C 1.50698 * 126.46816 * 179.89254 * 4 3 2 6 6 C 1.53006 * 109.47184 * 264.68814 * 5 4 3 7 7 C 1.52999 * 109.46811 * 65.00358 * 6 5 4 8 8 C 1.52999 * 109.47054 * 185.00283 * 6 5 4 9 9 C 1.39743 * 107.05258 * 359.63331 * 4 3 2 10 10 C 1.39955 * 126.35045 * 180.25745 * 9 4 3 11 11 H 1.08001 * 119.99952 * 0.02562 * 10 9 4 12 12 C 1.40059 * 119.99485 * 179.97438 * 10 9 4 13 13 N 1.30865 * 120.00593 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99782 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46884 * 90.00187 * 14 12 10 16 16 H 1.48492 * 109.47210 * 210.00067 * 14 12 10 17 17 H 1.48499 * 109.47042 * 330.00495 * 14 12 10 18 18 N 1.36169 * 125.47244 * 179.68924 * 2 1 3 19 19 H 0.96998 * 125.74626 * 0.03981 * 18 2 1 20 20 H 1.09007 * 109.47319 * 270.28487 * 1 2 3 21 21 H 1.09002 * 109.47321 * 30.28307 * 1 2 3 22 22 H 1.09000 * 109.47462 * 150.28760 * 1 2 3 23 23 H 1.07995 * 125.95251 * 359.97438 * 3 2 1 24 24 H 1.09001 * 109.46665 * 144.69203 * 5 4 3 25 25 H 1.08993 * 109.47304 * 24.68759 * 5 4 3 26 26 H 1.08997 * 109.47395 * 305.00741 * 6 5 4 27 27 H 1.09001 * 109.47273 * 59.99848 * 7 6 5 28 28 H 1.09002 * 109.46911 * 179.97438 * 7 6 5 29 29 H 1.09009 * 109.47170 * 300.00068 * 7 6 5 30 30 H 1.08995 * 109.47070 * 60.00530 * 8 6 5 31 31 H 1.09002 * 109.47069 * 180.02562 * 8 6 5 32 32 H 1.09001 * 109.47018 * 300.00144 * 8 6 5 33 33 H 0.97001 * 119.99804 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2961 1.1073 0.0000 4 6 3.6255 0.6911 -0.0024 5 6 4.8424 1.5800 -0.0056 6 6 5.3300 1.7719 -1.4431 7 6 4.2711 2.5327 -2.2435 8 6 6.6354 2.5701 -1.4365 9 6 3.6173 -0.7063 0.0046 10 6 4.7397 -1.5424 0.0101 11 1 5.7315 -1.1149 0.0094 12 6 4.5766 -2.9334 0.0175 13 7 3.3748 -3.4514 0.0188 14 14 6.0746 -4.0494 0.0240 15 1 6.4710 -4.3376 1.4258 16 1 5.7475 -5.3212 -0.6693 17 1 7.1963 -3.3765 -0.6791 18 7 2.2971 -1.1089 0.0060 19 1 1.9848 -2.0273 0.0104 20 1 -0.3634 0.0051 1.0277 21 1 -0.3634 0.8874 -0.5182 22 1 -0.3634 -0.8925 -0.5093 23 1 1.9521 2.1310 -0.0004 24 1 5.6316 1.1174 0.5871 25 1 4.5860 2.5485 0.4234 26 1 5.5019 0.7981 -1.9016 27 1 4.0992 3.5066 -1.7850 28 1 4.6187 2.6699 -3.2675 29 1 3.3411 1.9641 -2.2482 30 1 7.3897 2.0280 -0.8663 31 1 6.9825 2.7072 -2.4606 32 1 6.4634 3.5439 -0.9780 33 1 3.2620 -4.4148 0.0236 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260856292.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:07 Heat of formation + Delta-G solvation = -4.474578 kcal Electronic energy + Delta-G solvation = -13688.930759 eV Core-core repulsion = 11520.472669 eV Total energy + Delta-G solvation = -2168.458090 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.11481 -35.38710 -33.47391 -30.43225 -29.36084 -27.16358 -26.41133 -25.66629 -22.47347 -19.63904 -18.45651 -18.08574 -17.00062 -15.04051 -14.47071 -13.93962 -13.48768 -12.93690 -12.78490 -12.69680 -12.12604 -11.88130 -11.64451 -11.51408 -11.31366 -11.16262 -11.04001 -10.77356 -10.54039 -10.28113 -10.06133 -9.90045 -9.64714 -9.42626 -9.27282 -6.95715 -6.79979 -6.66238 -4.09582 2.97620 3.09353 3.14565 3.92847 3.97693 4.32809 5.31599 5.42280 5.70948 5.81862 5.85942 6.18316 6.21322 6.34050 6.39004 6.42691 6.45433 6.52502 6.64324 6.74912 6.86484 6.95775 7.00138 7.16103 7.20744 7.31752 7.47831 7.69142 8.00229 8.20924 8.33638 8.85296 9.05410 9.30297 9.83198 10.28510 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.021717 B = 0.013752 C = 0.008914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.981920 B = 2035.566307 C = 3140.213689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.105 4.105 3 C -0.164 4.164 4 C -0.304 4.304 5 C -0.005 4.005 6 C -0.093 4.093 7 C -0.136 4.136 8 C -0.145 4.145 9 C 0.234 3.766 10 C -0.438 4.438 11 H 0.089 0.911 12 C 0.063 3.937 13 N -0.858 5.858 14 Si 0.923 3.077 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.263 1.263 18 N -0.549 5.549 19 H 0.417 0.583 20 H 0.043 0.957 21 H 0.055 0.945 22 H 0.042 0.958 23 H 0.096 0.904 24 H 0.045 0.955 25 H 0.037 0.963 26 H 0.069 0.931 27 H 0.040 0.960 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.103 4.035 -1.561 4.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.214 4.214 3 C -0.190 4.190 4 C -0.309 4.309 5 C -0.043 4.043 6 C -0.111 4.111 7 C -0.193 4.193 8 C -0.202 4.202 9 C 0.118 3.882 10 C -0.474 4.474 11 H 0.107 0.893 12 C -0.148 4.148 13 N -0.492 5.492 14 Si 0.749 3.251 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.187 1.187 18 N -0.156 5.156 19 H 0.263 0.737 20 H 0.061 0.939 21 H 0.074 0.926 22 H 0.061 0.939 23 H 0.114 0.886 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.884 3.694 -1.565 4.108 hybrid contribution 0.384 -0.996 0.002 1.068 sum 1.268 2.698 -1.563 3.366 Atomic orbital electron populations 1.19918 0.91421 1.00477 0.99854 1.19800 0.91578 0.87954 1.22024 1.19804 0.93115 0.94716 1.11326 1.19121 0.92722 0.91876 1.27145 1.19448 0.94984 0.96277 0.93593 1.21134 0.93334 0.98605 0.98037 1.21743 1.00280 0.99494 0.97772 1.21874 0.98224 0.99820 1.00289 1.17806 0.82981 0.91113 0.96267 1.18789 0.93452 0.89706 1.45460 0.89289 1.25873 0.97274 0.98974 0.92670 1.68848 1.22946 1.13947 1.43486 0.86036 0.81327 0.78761 0.78962 1.19703 1.20548 1.18668 1.42718 1.05425 1.08030 1.59449 0.73704 0.93860 0.92621 0.93862 0.88611 0.93593 0.94402 0.91246 0.94108 0.94706 0.91623 0.93243 0.93885 0.93587 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.13 10.41 36.00 0.37 -0.75 16 2 C -0.10 -2.51 7.15 -81.48 -0.58 -3.09 16 3 C -0.16 -3.92 9.72 -40.00 -0.39 -4.31 16 4 C -0.30 -7.55 4.78 -103.66 -0.50 -8.04 16 5 C -0.01 -0.11 4.91 -27.88 -0.14 -0.24 16 6 C -0.09 -1.77 2.91 -90.62 -0.26 -2.03 16 7 C -0.14 -2.44 8.97 37.16 0.33 -2.10 16 8 C -0.14 -2.28 9.19 37.16 0.34 -1.94 16 9 C 0.23 6.34 6.71 -83.87 -0.56 5.78 16 10 C -0.44 -11.70 9.09 -38.26 -0.35 -12.05 16 11 H 0.09 2.29 7.44 -52.49 -0.39 1.90 16 12 C 0.06 1.58 5.50 -17.28 -0.10 1.49 16 13 N -0.86 -22.01 10.69 55.56 0.59 -21.41 16 14 Si 0.92 19.25 29.56 -169.99 -5.03 14.23 16 15 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 16 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 18 N -0.55 -14.40 5.77 -6.67 -0.04 -14.44 16 19 H 0.42 10.93 6.28 -40.82 -0.26 10.67 16 20 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 21 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 24 H 0.05 0.99 7.79 -51.93 -0.40 0.59 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.32 6.68 -51.92 -0.35 0.98 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 LS Contribution 272.64 15.07 4.11 4.11 Total: -1.00 -27.09 272.64 -7.37 -34.46 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -5.18 Total: 10.35 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: -1.82 Total: -27.29 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.56 Total: -35.85 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.09 -7.37 -34.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260856292.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.981 kcal (2) G-P(sol) polarization free energy of solvation -27.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds