Wall clock time and date at job start Mon Mar 30 2020 02:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35976 * 125.47566 * 2 1 4 4 C 1.39305 * 108.08956 * 180.10570 * 3 2 1 5 5 C 1.50698 * 126.46816 * 179.89254 * 4 3 2 6 6 C 1.53006 * 109.47184 * 264.68814 * 5 4 3 7 7 C 1.52999 * 109.46811 * 65.00358 * 6 5 4 8 8 C 1.52999 * 109.47054 * 185.00283 * 6 5 4 9 9 C 1.39743 * 107.05258 * 359.63331 * 4 3 2 10 10 C 1.39955 * 126.35045 * 180.25745 * 9 4 3 11 11 H 1.08001 * 119.99952 * 0.02562 * 10 9 4 12 12 C 1.40059 * 119.99485 * 179.97438 * 10 9 4 13 13 N 1.30865 * 120.00593 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99782 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46884 * 90.00187 * 14 12 10 16 16 H 1.48492 * 109.47210 * 210.00067 * 14 12 10 17 17 H 1.48499 * 109.47042 * 330.00495 * 14 12 10 18 18 N 1.36169 * 125.47244 * 179.68924 * 2 1 3 19 19 H 0.96998 * 125.74626 * 0.03981 * 18 2 1 20 20 H 1.09007 * 109.47319 * 270.28487 * 1 2 3 21 21 H 1.09002 * 109.47321 * 30.28307 * 1 2 3 22 22 H 1.09000 * 109.47462 * 150.28760 * 1 2 3 23 23 H 1.07995 * 125.95251 * 359.97438 * 3 2 1 24 24 H 1.09001 * 109.46665 * 144.69203 * 5 4 3 25 25 H 1.08993 * 109.47304 * 24.68759 * 5 4 3 26 26 H 1.08997 * 109.47395 * 305.00741 * 6 5 4 27 27 H 1.09001 * 109.47273 * 59.99848 * 7 6 5 28 28 H 1.09002 * 109.46911 * 179.97438 * 7 6 5 29 29 H 1.09009 * 109.47170 * 300.00068 * 7 6 5 30 30 H 1.08995 * 109.47070 * 60.00530 * 8 6 5 31 31 H 1.09002 * 109.47069 * 180.02562 * 8 6 5 32 32 H 1.09001 * 109.47018 * 300.00144 * 8 6 5 33 33 H 0.97001 * 119.99804 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2961 1.1073 0.0000 4 6 3.6255 0.6911 -0.0024 5 6 4.8424 1.5800 -0.0056 6 6 5.3300 1.7719 -1.4431 7 6 4.2711 2.5327 -2.2435 8 6 6.6354 2.5701 -1.4365 9 6 3.6173 -0.7063 0.0046 10 6 4.7397 -1.5424 0.0101 11 1 5.7315 -1.1149 0.0094 12 6 4.5766 -2.9334 0.0175 13 7 3.3748 -3.4514 0.0188 14 14 6.0746 -4.0494 0.0240 15 1 6.4710 -4.3376 1.4258 16 1 5.7475 -5.3212 -0.6693 17 1 7.1963 -3.3765 -0.6791 18 7 2.2971 -1.1089 0.0060 19 1 1.9848 -2.0273 0.0104 20 1 -0.3634 0.0051 1.0277 21 1 -0.3634 0.8874 -0.5182 22 1 -0.3634 -0.8925 -0.5093 23 1 1.9521 2.1310 -0.0004 24 1 5.6316 1.1174 0.5871 25 1 4.5860 2.5485 0.4234 26 1 5.5019 0.7981 -1.9016 27 1 4.0992 3.5066 -1.7850 28 1 4.6187 2.6699 -3.2675 29 1 3.3411 1.9641 -2.2482 30 1 7.3897 2.0280 -0.8663 31 1 6.9825 2.7072 -2.4606 32 1 6.4634 3.5439 -0.9780 33 1 3.2620 -4.4148 0.0236 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260856292.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:07 Heat of formation + Delta-G solvation = -18.143683 kcal Electronic energy + Delta-G solvation = -13689.523496 eV Core-core repulsion = 11520.472669 eV Total energy + Delta-G solvation = -2169.050827 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.00453 -36.94441 -35.38494 -32.16558 -31.19258 -28.98665 -27.81656 -27.34948 -24.32404 -21.25002 -20.30589 -19.95098 -18.90068 -16.91166 -16.18398 -15.52563 -15.12392 -14.48872 -14.43678 -14.39342 -13.92036 -13.52199 -13.21383 -12.99820 -12.91576 -12.75341 -12.70722 -12.46382 -12.18917 -12.05803 -11.67524 -11.50235 -11.27170 -11.15597 -11.11784 -8.86669 -8.68977 -8.61591 -6.05411 1.29730 1.38448 1.51879 2.04618 2.22920 2.47146 3.43248 3.46737 4.24514 4.39059 4.40217 4.63657 4.70688 4.88063 4.93037 4.93297 4.98464 5.08994 5.10950 5.16405 5.27173 5.28650 5.32092 5.44235 5.61240 5.67933 5.68361 5.86733 6.08350 6.28499 6.41887 6.89504 7.18038 7.34628 7.85687 8.40445 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.021717 B = 0.013752 C = 0.008914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.981920 B = 2035.566307 C = 3140.213689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.113 4.113 3 C -0.179 4.179 4 C -0.311 4.311 5 C -0.004 4.004 6 C -0.090 4.090 7 C -0.129 4.129 8 C -0.137 4.137 9 C 0.187 3.813 10 C -0.470 4.470 11 H 0.085 0.915 12 C 0.020 3.980 13 N -0.881 5.881 14 Si 0.994 3.006 15 H -0.266 1.266 16 H -0.271 1.271 17 H -0.260 1.260 18 N -0.561 5.561 19 H 0.412 0.588 20 H 0.057 0.943 21 H 0.079 0.921 22 H 0.049 0.951 23 H 0.116 0.884 24 H 0.034 0.966 25 H 0.051 0.949 26 H 0.038 0.962 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 4.791 -1.862 5.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.223 4.223 3 C -0.205 4.205 4 C -0.315 4.315 5 C -0.042 4.042 6 C -0.109 4.109 7 C -0.186 4.186 8 C -0.194 4.194 9 C 0.072 3.928 10 C -0.505 4.505 11 H 0.103 0.897 12 C -0.187 4.187 13 N -0.516 5.516 14 Si 0.816 3.184 15 H -0.191 1.191 16 H -0.196 1.196 17 H -0.184 1.184 18 N -0.167 5.167 19 H 0.257 0.743 20 H 0.076 0.924 21 H 0.098 0.902 22 H 0.068 0.932 23 H 0.134 0.866 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.256 4.464 -1.866 4.998 hybrid contribution 0.176 -1.177 0.103 1.194 sum 1.431 3.287 -1.763 3.995 Atomic orbital electron populations 1.20004 0.88084 1.01969 1.01253 1.20648 0.93914 0.87335 1.20366 1.20098 0.92896 0.95762 1.11734 1.19624 0.94416 0.91696 1.25796 1.19490 0.93453 0.96030 0.95194 1.21043 0.95589 0.97985 0.96244 1.21663 0.98493 0.99509 0.98960 1.21790 0.96081 0.99872 1.01703 1.18296 0.83637 0.92456 0.98404 1.18976 0.93367 0.90918 1.47264 0.89716 1.26721 1.00316 0.99892 0.91809 1.68890 1.24510 1.14616 1.43539 0.84986 0.77563 0.76762 0.79128 1.19095 1.19595 1.18377 1.42870 1.05687 1.08410 1.59772 0.74268 0.92382 0.90241 0.93231 0.86591 0.94779 0.93010 0.94361 0.92412 0.92743 0.94436 0.93253 0.92103 0.91927 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.03 10.41 71.23 0.74 -1.29 16 2 C -0.11 -5.41 7.15 41.36 0.30 -5.12 16 3 C -0.18 -8.53 9.72 22.00 0.21 -8.32 16 4 C -0.31 -15.63 4.78 -19.24 -0.09 -15.72 16 5 C 0.00 -0.16 4.91 29.85 0.15 -0.01 16 6 C -0.09 -3.38 2.91 -10.79 -0.03 -3.41 16 7 C -0.13 -4.44 8.97 71.98 0.65 -3.80 16 8 C -0.14 -4.03 9.19 71.98 0.66 -3.37 16 9 C 0.19 10.43 6.71 38.95 0.26 10.69 16 10 C -0.47 -25.87 9.09 23.13 0.21 -25.66 16 11 H 0.08 4.54 7.44 -2.91 -0.02 4.52 16 12 C 0.02 1.04 5.50 85.28 0.47 1.51 16 13 N -0.88 -45.92 10.69 21.85 0.23 -45.69 16 14 Si 0.99 39.67 29.56 68.60 2.03 41.70 16 15 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 16 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 17 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 18 N -0.56 -30.00 5.77 -175.02 -1.01 -31.01 16 19 H 0.41 22.15 6.28 -92.71 -0.58 21.57 16 20 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 21 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 22 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 24 H 0.03 1.49 7.79 -2.39 -0.02 1.47 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.04 1.48 6.68 -2.38 -0.02 1.47 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 33 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 Total: -1.00 -58.82 272.64 5.27 -53.55 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: 0.50 Total: 35.92 kcal Atomic # 6 Polarization: -57.99 SS G_CDS: 3.52 Total: -54.47 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -0.78 Total: -76.70 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -58.82 5.27 -53.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260856292.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.408 kcal (2) G-P(sol) polarization free energy of solvation -58.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds