Wall clock time and date at job start Mon Mar 30 2020 02:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.40063 * 125.90982 * 2 1 4 4 C 1.32925 * 108.12185 * 180.16939 * 3 2 1 5 5 C 1.41408 * 126.05639 * 179.85092 * 4 3 2 6 6 H 1.07999 * 120.00032 * 185.90056 * 5 4 3 7 7 C 1.39814 * 120.00300 * 5.89699 * 5 4 3 8 8 N 1.30905 * 119.99899 * 183.50919 * 7 5 4 9 9 Si 1.86795 * 119.99750 * 3.23342 * 7 5 4 10 10 H 1.48503 * 109.47221 * 180.27382 * 9 7 5 11 11 H 1.48495 * 109.47547 * 300.27531 * 9 7 5 12 12 H 1.48503 * 109.47083 * 60.27404 * 9 7 5 13 13 C 1.41654 * 107.87980 * 359.58940 * 4 3 2 14 14 C 1.35525 * 107.81014 * 0.26163 * 13 4 3 15 15 N 1.39091 * 125.99686 * 179.97438 * 14 13 4 16 16 C 1.46496 * 120.00480 * 0.02562 * 15 14 13 17 17 C 1.53004 * 117.50121 * 223.62163 * 16 15 14 18 18 C 1.52993 * 60.00240 * 252.50892 * 17 16 15 19 19 H 1.09008 * 109.47296 * 270.29099 * 1 2 3 20 20 H 1.09000 * 109.47384 * 30.28692 * 1 2 3 21 21 H 1.08998 * 109.47158 * 150.29225 * 1 2 3 22 22 H 0.96998 * 120.00298 * 354.50637 * 8 7 5 23 23 H 1.08005 * 126.09675 * 180.28170 * 13 4 3 24 24 H 0.97008 * 119.99984 * 180.02562 * 15 14 13 25 25 H 1.09004 * 115.55060 * 9.32455 * 16 15 14 26 26 H 1.09000 * 117.49636 * 0.02562 * 17 16 15 27 27 H 1.08994 * 117.50029 * 145.01582 * 17 16 15 28 28 H 1.08999 * 117.49849 * 252.51259 * 18 17 16 29 29 H 1.09001 * 117.50065 * 107.48447 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2864 1.1344 0.0000 4 6 3.5521 0.7283 -0.0037 5 6 4.6938 1.5626 -0.0080 6 1 5.6784 1.1300 -0.1070 7 6 4.5482 2.9476 0.1158 8 7 5.5986 3.7254 0.0430 9 14 2.8536 3.6888 0.3775 10 1 2.9685 5.1664 0.4702 11 1 1.9751 3.3313 -0.7651 12 1 2.2700 3.1578 1.6356 13 6 3.5544 -0.6882 0.0035 14 6 2.2648 -1.1048 0.0056 15 7 1.8328 -2.4269 0.0118 16 6 2.8112 -3.5173 0.0173 17 6 2.5521 -4.7037 -0.9134 18 6 2.3674 -4.8618 0.5971 19 1 -0.3634 0.0052 1.0277 20 1 -0.3634 0.8874 -0.5183 21 1 -0.3633 -0.8926 -0.5093 22 1 6.4858 3.3378 -0.0168 23 1 4.4281 -1.3231 0.0070 24 1 0.8836 -2.6270 0.0125 25 1 3.8474 -3.2183 0.1755 26 1 1.6538 -4.6728 -1.5300 27 1 3.4178 -5.1854 -1.3677 28 1 3.1117 -5.4475 1.1366 29 1 1.3475 -4.9351 0.9746 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261029302.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:08 Heat of formation + Delta-G solvation = 94.705658 kcal Electronic energy + Delta-G solvation = -13161.452421 eV Core-core repulsion = 10893.754765 eV Total energy + Delta-G solvation = -2267.697656 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.55832 -37.45342 -33.82030 -32.50282 -31.69627 -27.51083 -26.66595 -23.95074 -22.38724 -21.78942 -19.96468 -18.67285 -17.83367 -16.33281 -15.75268 -14.59409 -14.43728 -14.00075 -13.43915 -13.09414 -12.48037 -12.33530 -11.87702 -11.78375 -11.61683 -11.42148 -11.35816 -10.54438 -10.49650 -10.21427 -9.33445 -9.16589 -8.86355 -8.21069 -7.65012 -6.91294 -6.59012 -4.38268 3.14157 3.24018 3.68005 3.69350 3.99012 4.00317 4.28968 4.38555 4.63004 4.84632 4.99342 5.02145 5.32069 5.57323 5.62664 5.74346 5.74913 5.88810 5.91005 6.04013 6.55794 6.66841 7.08367 7.27318 7.62591 7.84629 7.96014 8.47005 8.65399 8.74335 9.10737 9.60221 10.45470 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.047579 B = 0.009215 C = 0.007913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.353133 B = 3037.706921 C = 3537.716837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.429 5.429 3 N -0.427 5.427 4 C 0.235 3.765 5 C -0.496 4.496 6 H 0.076 0.924 7 C 0.050 3.950 8 N -0.843 5.843 9 Si 1.111 2.889 10 H -0.314 1.314 11 H -0.267 1.267 12 H -0.284 1.284 13 C -0.361 4.361 14 C 0.346 3.654 15 N -0.714 5.714 16 C 0.123 3.877 17 C -0.206 4.206 18 C -0.200 4.200 19 H 0.050 0.950 20 H 0.077 0.923 21 H 0.058 0.942 22 H 0.278 0.722 23 H 0.118 0.882 24 H 0.389 0.611 25 H 0.131 0.869 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.103 -13.117 0.100 15.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.217 5.217 3 N -0.261 5.261 4 C 0.085 3.915 5 C -0.536 4.536 6 H 0.094 0.906 7 C -0.167 4.167 8 N -0.470 5.470 9 Si 0.942 3.058 10 H -0.244 1.244 11 H -0.194 1.194 12 H -0.210 1.210 13 C -0.395 4.395 14 C 0.127 3.873 15 N -0.350 5.350 16 C 0.014 3.986 17 C -0.245 4.245 18 C -0.239 4.239 19 H 0.068 0.932 20 H 0.095 0.905 21 H 0.076 0.924 22 H 0.088 0.912 23 H 0.136 0.864 24 H 0.223 0.777 25 H 0.149 0.851 26 H 0.110 0.890 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.599 -10.770 0.222 14.429 hybrid contribution 0.994 -2.634 -0.170 2.820 sum -8.604 -13.404 0.052 15.928 Atomic orbital electron populations 1.21266 0.77831 1.02144 1.00975 1.48174 1.04140 1.02465 1.66875 1.77243 1.00387 1.01945 1.46559 1.19363 0.91671 0.91112 0.89366 1.19769 0.92060 0.92687 1.49103 0.90605 1.27179 1.06179 0.93965 0.89395 1.70671 1.00317 1.39343 1.36698 0.82728 0.72187 0.71395 0.79490 1.24445 1.19365 1.21050 1.20450 0.92578 0.95722 1.30715 1.17890 0.90942 0.79601 0.98866 1.42962 1.06628 1.00537 1.84853 1.21302 0.94127 0.81313 1.01843 1.23471 1.03728 1.04447 0.92900 1.23390 1.02846 1.01399 0.96308 0.93184 0.90473 0.92358 0.91173 0.86375 0.77698 0.85122 0.89015 0.88376 0.88241 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.00 11.28 59.84 0.67 2.67 15 2 N -0.43 -9.74 4.05 -67.15 -0.27 -10.01 15 3 N -0.43 -11.69 7.83 32.24 0.25 -11.43 15 4 C 0.23 6.65 6.50 -84.88 -0.55 6.10 15 5 C -0.50 -14.77 9.83 -37.79 -0.37 -15.15 15 6 H 0.08 2.27 8.05 -52.49 -0.42 1.84 15 7 C 0.05 1.48 5.51 -17.36 -0.10 1.39 15 8 N -0.84 -25.00 13.66 55.54 0.76 -24.24 15 9 Si 1.11 29.35 25.85 -169.99 -4.39 24.96 15 10 H -0.31 -8.05 7.11 56.52 0.40 -7.64 15 11 H -0.27 -7.07 6.78 56.52 0.38 -6.68 15 12 H -0.28 -7.53 7.11 56.52 0.40 -7.13 15 13 C -0.36 -8.89 9.98 -39.25 -0.39 -9.28 15 14 C 0.35 7.44 7.71 -152.71 -1.18 6.26 15 15 N -0.71 -11.48 5.74 -53.86 -0.31 -11.78 15 16 C 0.12 1.68 6.45 -67.93 -0.44 1.24 15 17 C -0.21 -2.26 10.46 -26.73 -0.28 -2.54 15 18 C -0.20 -2.11 10.45 -26.73 -0.28 -2.39 15 19 H 0.05 0.75 8.14 -51.92 -0.42 0.32 15 20 H 0.08 1.25 8.14 -51.93 -0.42 0.82 15 21 H 0.06 0.75 7.49 -51.93 -0.39 0.36 15 22 H 0.28 7.93 8.72 -40.82 -0.36 7.57 15 23 H 0.12 2.70 6.94 -52.48 -0.36 2.33 15 24 H 0.39 5.27 8.08 -40.82 -0.33 4.94 15 25 H 0.13 1.92 6.64 -51.93 -0.34 1.57 15 26 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15 27 H 0.10 0.97 8.14 -51.93 -0.42 0.54 15 28 H 0.10 0.92 8.14 -51.93 -0.42 0.50 15 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 15 LS Contribution 251.08 15.07 3.78 3.78 Total: -1.00 -33.38 251.08 -6.65 -40.03 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -3.56 Total: 0.40 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -2.91 Total: -11.69 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 0.43 Total: -57.47 kcal Atomic # 14 Polarization: 29.35 SS G_CDS: -4.39 Total: 24.96 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -33.38 -6.65 -40.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261029302.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.732 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds