Wall clock time and date at job start Mon Mar 30 2020 02:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.40063 * 125.90982 * 2 1 4 4 C 1.32925 * 108.12185 * 180.16939 * 3 2 1 5 5 C 1.41408 * 126.05639 * 179.85092 * 4 3 2 6 6 H 1.07999 * 120.00032 * 185.90056 * 5 4 3 7 7 C 1.39814 * 120.00300 * 5.89699 * 5 4 3 8 8 N 1.30905 * 119.99899 * 183.50919 * 7 5 4 9 9 Si 1.86795 * 119.99750 * 3.23342 * 7 5 4 10 10 H 1.48503 * 109.47221 * 180.27382 * 9 7 5 11 11 H 1.48495 * 109.47547 * 300.27531 * 9 7 5 12 12 H 1.48503 * 109.47083 * 60.27404 * 9 7 5 13 13 C 1.41654 * 107.87980 * 359.58940 * 4 3 2 14 14 C 1.35525 * 107.81014 * 0.26163 * 13 4 3 15 15 N 1.39091 * 125.99686 * 179.97438 * 14 13 4 16 16 C 1.46496 * 120.00480 * 0.02562 * 15 14 13 17 17 C 1.53004 * 117.50121 * 223.62163 * 16 15 14 18 18 C 1.52993 * 60.00240 * 252.50892 * 17 16 15 19 19 H 1.09008 * 109.47296 * 270.29099 * 1 2 3 20 20 H 1.09000 * 109.47384 * 30.28692 * 1 2 3 21 21 H 1.08998 * 109.47158 * 150.29225 * 1 2 3 22 22 H 0.96998 * 120.00298 * 354.50637 * 8 7 5 23 23 H 1.08005 * 126.09675 * 180.28170 * 13 4 3 24 24 H 0.97008 * 119.99984 * 180.02562 * 15 14 13 25 25 H 1.09004 * 115.55060 * 9.32455 * 16 15 14 26 26 H 1.09000 * 117.49636 * 0.02562 * 17 16 15 27 27 H 1.08994 * 117.50029 * 145.01582 * 17 16 15 28 28 H 1.08999 * 117.49849 * 252.51259 * 18 17 16 29 29 H 1.09001 * 117.50065 * 107.48447 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2864 1.1344 0.0000 4 6 3.5521 0.7283 -0.0037 5 6 4.6938 1.5626 -0.0080 6 1 5.6784 1.1300 -0.1070 7 6 4.5482 2.9476 0.1158 8 7 5.5986 3.7254 0.0430 9 14 2.8536 3.6888 0.3775 10 1 2.9685 5.1664 0.4702 11 1 1.9751 3.3313 -0.7651 12 1 2.2700 3.1578 1.6356 13 6 3.5544 -0.6882 0.0035 14 6 2.2648 -1.1048 0.0056 15 7 1.8328 -2.4269 0.0118 16 6 2.8112 -3.5173 0.0173 17 6 2.5521 -4.7037 -0.9134 18 6 2.3674 -4.8618 0.5971 19 1 -0.3634 0.0052 1.0277 20 1 -0.3634 0.8874 -0.5183 21 1 -0.3633 -0.8926 -0.5093 22 1 6.4858 3.3378 -0.0168 23 1 4.4281 -1.3231 0.0070 24 1 0.8836 -2.6270 0.0125 25 1 3.8474 -3.2183 0.1755 26 1 1.6538 -4.6728 -1.5300 27 1 3.4178 -5.1854 -1.3677 28 1 3.1117 -5.4475 1.1366 29 1 1.3475 -4.9351 0.9746 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261029302.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:08 Heat of formation + Delta-G solvation = 71.748979 kcal Electronic energy + Delta-G solvation = -13162.447897 eV Core-core repulsion = 10893.754765 eV Total energy + Delta-G solvation = -2268.693132 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.35577 -38.58669 -35.82182 -34.12314 -33.38675 -29.33604 -28.50620 -25.73481 -23.21565 -23.04712 -21.85132 -20.41629 -19.74635 -18.04564 -16.95361 -16.19547 -16.07387 -15.48364 -15.33511 -14.68831 -14.04152 -13.73883 -13.68174 -13.41844 -13.12962 -12.94756 -12.42159 -12.35603 -12.23304 -11.54656 -11.38629 -11.15327 -10.53202 -10.24055 -9.51287 -9.17212 -8.25198 -6.60715 1.33785 1.43745 1.68990 1.73101 2.10042 2.27056 2.45549 2.79567 3.04931 3.40913 3.86231 4.00073 4.09417 4.13874 4.49655 4.63928 4.66656 4.78819 4.83300 4.97280 5.03741 5.24738 5.31639 5.49300 5.63976 5.89326 6.11966 6.55820 6.67118 6.91938 7.05912 7.58237 8.19720 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.047579 B = 0.009215 C = 0.007913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.353133 B = 3037.706921 C = 3537.716837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.432 5.432 3 N -0.450 5.450 4 C 0.212 3.788 5 C -0.525 4.525 6 H 0.054 0.946 7 C 0.017 3.983 8 N -0.865 5.865 9 Si 1.154 2.846 10 H -0.303 1.303 11 H -0.269 1.269 12 H -0.288 1.288 13 C -0.402 4.402 14 C 0.376 3.624 15 N -0.694 5.694 16 C 0.078 3.922 17 C -0.189 4.189 18 C -0.173 4.173 19 H 0.071 0.929 20 H 0.079 0.921 21 H 0.100 0.900 22 H 0.273 0.727 23 H 0.121 0.879 24 H 0.406 0.594 25 H 0.113 0.887 26 H 0.100 0.900 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.834 -15.517 0.158 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.220 5.220 3 N -0.284 5.284 4 C 0.060 3.940 5 C -0.564 4.564 6 H 0.072 0.928 7 C -0.196 4.196 8 N -0.494 5.494 9 Si 0.982 3.018 10 H -0.233 1.233 11 H -0.196 1.196 12 H -0.215 1.215 13 C -0.436 4.436 14 C 0.152 3.848 15 N -0.332 5.332 16 C -0.029 4.029 17 C -0.228 4.228 18 C -0.212 4.212 19 H 0.089 0.911 20 H 0.098 0.902 21 H 0.119 0.881 22 H 0.084 0.916 23 H 0.139 0.861 24 H 0.243 0.757 25 H 0.130 0.870 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.132 0.868 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.341 -13.209 0.277 18.079 hybrid contribution 1.701 -2.152 -0.197 2.750 sum -10.640 -15.361 0.080 18.687 Atomic orbital electron populations 1.21767 0.74073 1.04472 1.03057 1.48489 1.06190 1.01603 1.65753 1.77027 1.00516 1.04847 1.45962 1.19441 0.91690 0.92761 0.90077 1.19801 0.92096 0.93510 1.51041 0.92772 1.28079 1.08110 0.94341 0.89045 1.70702 1.00370 1.39367 1.38940 0.82159 0.69450 0.71306 0.78902 1.23319 1.19570 1.21478 1.20488 0.94583 0.94473 1.34011 1.17821 0.89823 0.81532 0.95626 1.42987 1.08083 0.98611 1.83493 1.21503 0.93215 0.81877 1.06327 1.23531 1.04475 1.01305 0.93486 1.23478 1.03924 0.97619 0.96131 0.91088 0.90209 0.88125 0.91642 0.86085 0.75693 0.86950 0.88114 0.87286 0.86770 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.11 11.28 127.77 1.44 4.55 15 2 N -0.43 -18.65 4.05 -366.35 -1.48 -20.13 15 3 N -0.45 -24.40 7.83 -51.91 -0.41 -24.81 15 4 C 0.21 12.24 6.50 40.60 0.26 12.50 15 5 C -0.53 -32.66 9.83 23.43 0.23 -32.43 15 6 H 0.05 3.46 8.05 -2.91 -0.02 3.44 15 7 C 0.02 1.01 5.51 85.21 0.47 1.48 15 8 N -0.87 -53.01 13.66 21.80 0.30 -52.71 15 9 Si 1.15 60.65 25.85 68.60 1.77 62.43 15 10 H -0.30 -15.15 7.11 99.48 0.71 -14.44 15 11 H -0.27 -14.04 6.78 99.48 0.67 -13.37 15 12 H -0.29 -15.09 7.11 99.48 0.71 -14.38 15 13 C -0.40 -20.02 9.98 22.49 0.22 -19.80 15 14 C 0.38 15.48 7.71 130.96 1.01 16.49 15 15 N -0.69 -20.05 5.74 -324.33 -1.86 -21.91 15 16 C 0.08 1.92 6.45 44.99 0.29 2.21 15 17 C -0.19 -3.40 10.46 30.59 0.32 -3.08 15 18 C -0.17 -2.89 10.45 30.59 0.32 -2.57 15 19 H 0.07 1.81 8.14 -2.38 -0.02 1.79 15 20 H 0.08 2.31 8.14 -2.39 -0.02 2.29 15 21 H 0.10 2.07 7.49 -2.39 -0.02 2.05 15 22 H 0.27 16.36 8.72 -92.71 -0.81 15.55 15 23 H 0.12 5.73 6.94 -2.91 -0.02 5.71 15 24 H 0.41 9.06 8.08 -92.70 -0.75 8.31 15 25 H 0.11 3.21 6.64 -2.38 -0.02 3.19 15 26 H 0.10 1.68 8.14 -2.39 -0.02 1.66 15 27 H 0.11 1.75 8.14 -2.39 -0.02 1.73 15 28 H 0.11 1.62 8.14 -2.39 -0.02 1.61 15 29 H 0.11 1.52 8.14 -2.39 -0.02 1.50 15 Total: -1.00 -74.37 251.08 3.23 -71.14 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 0.34 Total: 6.64 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 4.57 Total: -20.64 kcal Atomic # 7 Polarization: -116.12 SS G_CDS: -3.45 Total: -119.57 kcal Atomic # 14 Polarization: 60.65 SS G_CDS: 1.77 Total: 62.43 kcal Total: -74.37 3.23 -71.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261029302.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.890 kcal (2) G-P(sol) polarization free energy of solvation -74.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds